Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2075

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2074 and Shewana3_2075 are separated by 0 nucleotidesShewana3_2075 and Shewana3_2076 overlap by 4 nucleotidesShewana3_2076 and Shewana3_2077 overlap by 26 nucleotides Shewana3_2074: Shewana3_2074 - L-arabinose ABC transporter, ATPase component AraV (from data), at 2,482,251 to 2,483,750 _2074 Shewana3_2075: Shewana3_2075 - L-arabinose ABC transporter, permease component 1 AraW (from data), at 2,483,751 to 2,484,968 _2075 Shewana3_2076: Shewana3_2076 - L-arabinose ABC transporter, permease component 2 AraZ (from data), at 2,484,965 to 2,485,927 _2076 Shewana3_2077: Shewana3_2077 - glycoside hydrolase family protein (RefSeq), at 2,485,902 to 2,487,035 _2077 Position (kb) 2483 2484 2485Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2482.921 kb on + strand, within Shewana3_2074at 2482.931 kb on + strand, within Shewana3_2074at 2482.945 kb on - strand, within Shewana3_2074at 2483.039 kb on - strand, within Shewana3_2074at 2483.131 kb on + strand, within Shewana3_2074at 2483.131 kb on + strand, within Shewana3_2074at 2483.134 kb on - strand, within Shewana3_2074at 2483.203 kb on - strand, within Shewana3_2074at 2483.222 kb on + strand, within Shewana3_2074at 2483.626 kb on + strandat 2483.685 kb on - strandat 2483.714 kb on - strandat 2483.721 kb on + strandat 2483.804 kb on - strandat 2483.808 kb on + strandat 2483.816 kb on - strandat 2483.839 kb on - strandat 2484.035 kb on - strand, within Shewana3_2075at 2484.037 kb on - strand, within Shewana3_2075at 2484.085 kb on - strand, within Shewana3_2075at 2484.202 kb on + strand, within Shewana3_2075at 2484.410 kb on + strand, within Shewana3_2075at 2484.588 kb on + strand, within Shewana3_2075at 2484.659 kb on + strand, within Shewana3_2075at 2484.764 kb on - strand, within Shewana3_2075at 2484.769 kb on + strand, within Shewana3_2075at 2484.809 kb on + strand, within Shewana3_2075at 2485.035 kb on + strandat 2485.322 kb on - strand, within Shewana3_2076at 2485.354 kb on - strand, within Shewana3_2076at 2485.361 kb on - strand, within Shewana3_2076at 2485.433 kb on - strand, within Shewana3_2076at 2485.494 kb on + strand, within Shewana3_2076at 2485.826 kb on + strand, within Shewana3_2076at 2485.950 kb on - strandat 2485.962 kb on + strandat 2485.968 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,482,921 + Shewana3_2074 0.45 -4.1
2,482,931 + Shewana3_2074 0.45 -0.4
2,482,945 - Shewana3_2074 0.46 -1.9
2,483,039 - Shewana3_2074 0.53 -4.4
2,483,131 + Shewana3_2074 0.59 -5.3
2,483,131 + Shewana3_2074 0.59 -6.1
2,483,134 - Shewana3_2074 0.59 -5.3
2,483,203 - Shewana3_2074 0.63 -4.0
2,483,222 + Shewana3_2074 0.65 -1.4
2,483,626 + -6.3
2,483,685 - -4.7
2,483,714 - -3.1
2,483,721 + -5.3
2,483,804 - -5.3
2,483,808 + -5.7
2,483,816 - -3.3
2,483,839 - -3.6
2,484,035 - Shewana3_2075 0.23 -5.0
2,484,037 - Shewana3_2075 0.23 -5.6
2,484,085 - Shewana3_2075 0.27 -2.7
2,484,202 + Shewana3_2075 0.37 -3.4
2,484,410 + Shewana3_2075 0.54 -5.2
2,484,588 + Shewana3_2075 0.69 -5.4
2,484,659 + Shewana3_2075 0.75 -5.9
2,484,764 - Shewana3_2075 0.83 -4.2
2,484,769 + Shewana3_2075 0.84 -3.7
2,484,809 + Shewana3_2075 0.87 -5.4
2,485,035 + -3.5
2,485,322 - Shewana3_2076 0.37 -1.0
2,485,354 - Shewana3_2076 0.40 -4.9
2,485,361 - Shewana3_2076 0.41 -5.6
2,485,433 - Shewana3_2076 0.49 -6.2
2,485,494 + Shewana3_2076 0.55 -2.6
2,485,826 + Shewana3_2076 0.89 -5.1
2,485,950 - -1.9
2,485,962 + -3.0
2,485,968 + -2.1

Or see this region's nucleotide sequence