Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2073 and Shewana3_2074 are separated by 31 nucleotides Shewana3_2074 and Shewana3_2075 are separated by 0 nucleotides
Shewana3_2073: Shewana3_2073 - L-arabinose ABC transporter, substrate-binding component AraU (from data) , at 2,481,278 to 2,482,219
_2073
Shewana3_2074: Shewana3_2074 - L-arabinose ABC transporter, ATPase component AraV (from data) , at 2,482,251 to 2,483,750
_2074
Shewana3_2075: Shewana3_2075 - L-arabinose ABC transporter, permease component 1 AraW (from data) , at 2,483,751 to 2,484,968
_2075
Position (kb)
2482
2483
2484 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2481.324 kb on + strand at 2481.425 kb on - strand, within Shewana3_2073 at 2481.478 kb on + strand, within Shewana3_2073 at 2481.686 kb on + strand, within Shewana3_2073 at 2481.709 kb on - strand, within Shewana3_2073 at 2481.856 kb on + strand, within Shewana3_2073 at 2481.864 kb on - strand, within Shewana3_2073 at 2481.887 kb on + strand, within Shewana3_2073 at 2482.174 kb on - strand at 2482.277 kb on + strand at 2482.573 kb on + strand, within Shewana3_2074 at 2482.573 kb on + strand, within Shewana3_2074 at 2482.573 kb on + strand, within Shewana3_2074 at 2482.581 kb on - strand, within Shewana3_2074 at 2482.581 kb on - strand, within Shewana3_2074 at 2482.638 kb on - strand, within Shewana3_2074 at 2482.739 kb on - strand, within Shewana3_2074 at 2482.921 kb on + strand, within Shewana3_2074 at 2482.931 kb on + strand, within Shewana3_2074 at 2482.945 kb on - strand, within Shewana3_2074 at 2483.039 kb on - strand, within Shewana3_2074 at 2483.131 kb on + strand, within Shewana3_2074 at 2483.131 kb on + strand, within Shewana3_2074 at 2483.134 kb on - strand, within Shewana3_2074 at 2483.203 kb on - strand, within Shewana3_2074 at 2483.222 kb on + strand, within Shewana3_2074 at 2483.626 kb on + strand at 2483.685 kb on - strand at 2483.714 kb on - strand at 2483.721 kb on + strand at 2483.804 kb on - strand at 2483.808 kb on + strand at 2483.816 kb on - strand at 2483.839 kb on - strand at 2484.035 kb on - strand, within Shewana3_2075 at 2484.037 kb on - strand, within Shewana3_2075 at 2484.085 kb on - strand, within Shewana3_2075 at 2484.202 kb on + strand, within Shewana3_2075 at 2484.410 kb on + strand, within Shewana3_2075 at 2484.588 kb on + strand, within Shewana3_2075 at 2484.659 kb on + strand, within Shewana3_2075
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 2,481,324 + -2.1 2,481,425 - Shewana3_2073 0.16 -4.3 2,481,478 + Shewana3_2073 0.21 -5.7 2,481,686 + Shewana3_2073 0.43 -5.4 2,481,709 - Shewana3_2073 0.46 -3.2 2,481,856 + Shewana3_2073 0.61 -6.7 2,481,864 - Shewana3_2073 0.62 -4.2 2,481,887 + Shewana3_2073 0.65 -3.7 2,482,174 - -3.7 2,482,277 + -6.4 2,482,573 + Shewana3_2074 0.21 -4.8 2,482,573 + Shewana3_2074 0.21 -6.7 2,482,573 + Shewana3_2074 0.21 -6.1 2,482,581 - Shewana3_2074 0.22 -3.7 2,482,581 - Shewana3_2074 0.22 -5.9 2,482,638 - Shewana3_2074 0.26 -6.2 2,482,739 - Shewana3_2074 0.33 -4.6 2,482,921 + Shewana3_2074 0.45 -4.1 2,482,931 + Shewana3_2074 0.45 -0.4 2,482,945 - Shewana3_2074 0.46 -1.9 2,483,039 - Shewana3_2074 0.53 -4.4 2,483,131 + Shewana3_2074 0.59 -5.3 2,483,131 + Shewana3_2074 0.59 -6.1 2,483,134 - Shewana3_2074 0.59 -5.3 2,483,203 - Shewana3_2074 0.63 -4.0 2,483,222 + Shewana3_2074 0.65 -1.4 2,483,626 + -6.3 2,483,685 - -4.7 2,483,714 - -3.1 2,483,721 + -5.3 2,483,804 - -5.3 2,483,808 + -5.7 2,483,816 - -3.3 2,483,839 - -3.6 2,484,035 - Shewana3_2075 0.23 -5.0 2,484,037 - Shewana3_2075 0.23 -5.6 2,484,085 - Shewana3_2075 0.27 -2.7 2,484,202 + Shewana3_2075 0.37 -3.4 2,484,410 + Shewana3_2075 0.54 -5.2 2,484,588 + Shewana3_2075 0.69 -5.4 2,484,659 + Shewana3_2075 0.75 -5.9
Or see this region's nucleotide sequence