Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2074

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2073 and Shewana3_2074 are separated by 31 nucleotidesShewana3_2074 and Shewana3_2075 are separated by 0 nucleotides Shewana3_2073: Shewana3_2073 - L-arabinose ABC transporter, substrate-binding component AraU (from data), at 2,481,278 to 2,482,219 _2073 Shewana3_2074: Shewana3_2074 - L-arabinose ABC transporter, ATPase component AraV (from data), at 2,482,251 to 2,483,750 _2074 Shewana3_2075: Shewana3_2075 - L-arabinose ABC transporter, permease component 1 AraW (from data), at 2,483,751 to 2,484,968 _2075 Position (kb) 2482 2483 2484Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2481.324 kb on + strandat 2481.425 kb on - strand, within Shewana3_2073at 2481.478 kb on + strand, within Shewana3_2073at 2481.686 kb on + strand, within Shewana3_2073at 2481.709 kb on - strand, within Shewana3_2073at 2481.856 kb on + strand, within Shewana3_2073at 2481.864 kb on - strand, within Shewana3_2073at 2481.887 kb on + strand, within Shewana3_2073at 2482.174 kb on - strandat 2482.277 kb on + strandat 2482.573 kb on + strand, within Shewana3_2074at 2482.573 kb on + strand, within Shewana3_2074at 2482.573 kb on + strand, within Shewana3_2074at 2482.581 kb on - strand, within Shewana3_2074at 2482.581 kb on - strand, within Shewana3_2074at 2482.638 kb on - strand, within Shewana3_2074at 2482.739 kb on - strand, within Shewana3_2074at 2482.921 kb on + strand, within Shewana3_2074at 2482.931 kb on + strand, within Shewana3_2074at 2482.945 kb on - strand, within Shewana3_2074at 2483.039 kb on - strand, within Shewana3_2074at 2483.131 kb on + strand, within Shewana3_2074at 2483.131 kb on + strand, within Shewana3_2074at 2483.134 kb on - strand, within Shewana3_2074at 2483.203 kb on - strand, within Shewana3_2074at 2483.222 kb on + strand, within Shewana3_2074at 2483.626 kb on + strandat 2483.685 kb on - strandat 2483.714 kb on - strandat 2483.721 kb on + strandat 2483.804 kb on - strandat 2483.808 kb on + strandat 2483.816 kb on - strandat 2483.839 kb on - strandat 2484.035 kb on - strand, within Shewana3_2075at 2484.037 kb on - strand, within Shewana3_2075at 2484.085 kb on - strand, within Shewana3_2075at 2484.202 kb on + strand, within Shewana3_2075at 2484.410 kb on + strand, within Shewana3_2075at 2484.588 kb on + strand, within Shewana3_2075at 2484.659 kb on + strand, within Shewana3_2075

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,481,324 + -2.1
2,481,425 - Shewana3_2073 0.16 -4.3
2,481,478 + Shewana3_2073 0.21 -5.7
2,481,686 + Shewana3_2073 0.43 -5.4
2,481,709 - Shewana3_2073 0.46 -3.2
2,481,856 + Shewana3_2073 0.61 -6.7
2,481,864 - Shewana3_2073 0.62 -4.2
2,481,887 + Shewana3_2073 0.65 -3.7
2,482,174 - -3.7
2,482,277 + -6.4
2,482,573 + Shewana3_2074 0.21 -4.8
2,482,573 + Shewana3_2074 0.21 -6.7
2,482,573 + Shewana3_2074 0.21 -6.1
2,482,581 - Shewana3_2074 0.22 -3.7
2,482,581 - Shewana3_2074 0.22 -5.9
2,482,638 - Shewana3_2074 0.26 -6.2
2,482,739 - Shewana3_2074 0.33 -4.6
2,482,921 + Shewana3_2074 0.45 -4.1
2,482,931 + Shewana3_2074 0.45 -0.4
2,482,945 - Shewana3_2074 0.46 -1.9
2,483,039 - Shewana3_2074 0.53 -4.4
2,483,131 + Shewana3_2074 0.59 -5.3
2,483,131 + Shewana3_2074 0.59 -6.1
2,483,134 - Shewana3_2074 0.59 -5.3
2,483,203 - Shewana3_2074 0.63 -4.0
2,483,222 + Shewana3_2074 0.65 -1.4
2,483,626 + -6.3
2,483,685 - -4.7
2,483,714 - -3.1
2,483,721 + -5.3
2,483,804 - -5.3
2,483,808 + -5.7
2,483,816 - -3.3
2,483,839 - -3.6
2,484,035 - Shewana3_2075 0.23 -5.0
2,484,037 - Shewana3_2075 0.23 -5.6
2,484,085 - Shewana3_2075 0.27 -2.7
2,484,202 + Shewana3_2075 0.37 -3.4
2,484,410 + Shewana3_2075 0.54 -5.2
2,484,588 + Shewana3_2075 0.69 -5.4
2,484,659 + Shewana3_2075 0.75 -5.9

Or see this region's nucleotide sequence