Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2069

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2068 and Shewana3_2069 are separated by 109 nucleotidesShewana3_2069 and Shewana3_2070 are separated by 149 nucleotides Shewana3_2068: Shewana3_2068 - GntR family transcriptional regulator (RefSeq), at 2,475,530 to 2,476,246 _2068 Shewana3_2069: Shewana3_2069 - glycoside hydrolase family protein (RefSeq), at 2,476,356 to 2,477,303 _2069 Shewana3_2070: Shewana3_2070 - L-arabonate dehydratase (EC 4.2.1.25) (from data), at 2,477,453 to 2,479,213 _2070 Position (kb) 2476 2477 2478Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2475.367 kb on - strandat 2475.513 kb on - strandat 2475.563 kb on + strandat 2475.801 kb on + strand, within Shewana3_2068at 2475.903 kb on + strand, within Shewana3_2068at 2476.059 kb on + strand, within Shewana3_2068at 2476.391 kb on - strandat 2477.034 kb on - strand, within Shewana3_2069at 2477.072 kb on - strand, within Shewana3_2069at 2477.521 kb on + strandat 2477.647 kb on + strand, within Shewana3_2070at 2477.944 kb on + strand, within Shewana3_2070at 2477.950 kb on + strand, within Shewana3_2070at 2477.952 kb on - strand, within Shewana3_2070at 2478.094 kb on + strand, within Shewana3_2070at 2478.117 kb on + strand, within Shewana3_2070at 2478.287 kb on + strand, within Shewana3_2070

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,475,367 - +1.7
2,475,513 - +2.5
2,475,563 + +2.0
2,475,801 + Shewana3_2068 0.38 +2.5
2,475,903 + Shewana3_2068 0.52 +2.9
2,476,059 + Shewana3_2068 0.74 +2.3
2,476,391 - +0.9
2,477,034 - Shewana3_2069 0.72 +0.8
2,477,072 - Shewana3_2069 0.76 +1.4
2,477,521 + -3.5
2,477,647 + Shewana3_2070 0.11 -4.9
2,477,944 + Shewana3_2070 0.28 -4.0
2,477,950 + Shewana3_2070 0.28 -5.5
2,477,952 - Shewana3_2070 0.28 -5.0
2,478,094 + Shewana3_2070 0.36 -4.9
2,478,117 + Shewana3_2070 0.38 -5.0
2,478,287 + Shewana3_2070 0.47 -4.1

Or see this region's nucleotide sequence