Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2065

Experiment: L-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2064 and araD are separated by 1 nucleotidesaraD and Shewana3_2066 are separated by 38 nucleotides Shewana3_2064: Shewana3_2064 - ribulokinase (RefSeq), at 2,470,698 to 2,472,371 _2064 Shewana3_2065: araD - L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (from data), at 2,472,373 to 2,473,068 araD Shewana3_2066: Shewana3_2066 - L-arabinose isomerase (EC 5.3.1.4) (from data), at 2,473,107 to 2,474,609 _2066 Position (kb) 2472 2473 2474Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2471.471 kb on - strand, within Shewana3_2064at 2471.549 kb on + strand, within Shewana3_2064at 2471.911 kb on - strand, within Shewana3_2064at 2472.003 kb on + strand, within Shewana3_2064at 2472.004 kb on - strand, within Shewana3_2064at 2472.076 kb on + strand, within Shewana3_2064at 2472.263 kb on - strandat 2472.532 kb on + strand, within araDat 2472.540 kb on - strand, within araDat 2472.540 kb on - strand, within araDat 2472.653 kb on + strand, within araDat 2472.687 kb on - strand, within araDat 2472.716 kb on + strand, within araDat 2472.751 kb on - strand, within araDat 2472.875 kb on + strand, within araDat 2472.983 kb on + strand, within araDat 2473.163 kb on - strandat 2473.163 kb on - strandat 2473.359 kb on - strand, within Shewana3_2066at 2473.432 kb on - strand, within Shewana3_2066at 2473.714 kb on + strand, within Shewana3_2066at 2473.714 kb on + strand, within Shewana3_2066at 2473.748 kb on - strand, within Shewana3_2066at 2473.756 kb on - strand, within Shewana3_2066at 2473.926 kb on + strand, within Shewana3_2066

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
remove
2,471,471 - Shewana3_2064 0.46 -3.1
2,471,549 + Shewana3_2064 0.51 -4.0
2,471,911 - Shewana3_2064 0.72 -4.7
2,472,003 + Shewana3_2064 0.78 -5.0
2,472,004 - Shewana3_2064 0.78 -5.5
2,472,076 + Shewana3_2064 0.82 -5.0
2,472,263 - -5.5
2,472,532 + araD Shewana3_2065 0.23 -5.9
2,472,540 - araD Shewana3_2065 0.24 -5.2
2,472,540 - araD Shewana3_2065 0.24 -4.7
2,472,653 + araD Shewana3_2065 0.40 -5.3
2,472,687 - araD Shewana3_2065 0.45 -4.7
2,472,716 + araD Shewana3_2065 0.49 -5.0
2,472,751 - araD Shewana3_2065 0.54 -4.4
2,472,875 + araD Shewana3_2065 0.72 -4.0
2,472,983 + araD Shewana3_2065 0.88 -6.4
2,473,163 - -3.7
2,473,163 - -4.6
2,473,359 - Shewana3_2066 0.17 -5.4
2,473,432 - Shewana3_2066 0.22 -6.3
2,473,714 + Shewana3_2066 0.40 -5.7
2,473,714 + Shewana3_2066 0.40 -5.0
2,473,748 - Shewana3_2066 0.43 -5.0
2,473,756 - Shewana3_2066 0.43 -6.7
2,473,926 + Shewana3_2066 0.54 -6.1

Or see this region's nucleotide sequence