Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1906

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1904 and Shewana3_1905 are separated by 360 nucleotidesShewana3_1905 and Shewana3_1906 are separated by 28 nucleotidesShewana3_1906 and Shewana3_1907 are separated by 82 nucleotides Shewana3_1904: Shewana3_1904 - GCN5-related N-acetyltransferase (RefSeq), at 2,261,679 to 2,262,101 _1904 Shewana3_1905: Shewana3_1905 - hypothetical protein (RefSeq), at 2,262,462 to 2,262,698 _1905 Shewana3_1906: Shewana3_1906 - 3-deoxy-manno-octulosonate cytidylyltransferase (RefSeq), at 2,262,727 to 2,263,464 _1906 Shewana3_1907: Shewana3_1907 - iron-containing alcohol dehydrogenase (RefSeq), at 2,263,547 to 2,264,617 _1907 Position (kb) 2262 2263 2264Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2261.744 kb on + strand, within Shewana3_1904at 2262.050 kb on - strand, within Shewana3_1904at 2262.098 kb on - strandat 2262.161 kb on - strandat 2262.245 kb on - strandat 2262.385 kb on + strandat 2262.646 kb on - strand, within Shewana3_1905at 2262.745 kb on - strandat 2264.044 kb on - strand, within Shewana3_1907at 2264.054 kb on - strand, within Shewana3_1907at 2264.105 kb on + strand, within Shewana3_1907at 2264.161 kb on - strand, within Shewana3_1907at 2264.166 kb on - strand, within Shewana3_1907at 2264.408 kb on - strand, within Shewana3_1907at 2264.408 kb on - strand, within Shewana3_1907at 2264.408 kb on - strand, within Shewana3_1907at 2264.432 kb on - strand, within Shewana3_1907

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,261,744 + Shewana3_1904 0.15 +0.3
2,262,050 - Shewana3_1904 0.88 +0.3
2,262,098 - -0.4
2,262,161 - +1.1
2,262,245 - -0.8
2,262,385 + -1.2
2,262,646 - Shewana3_1905 0.78 +0.3
2,262,745 - -1.0
2,264,044 - Shewana3_1907 0.46 -3.3
2,264,054 - Shewana3_1907 0.47 -2.5
2,264,105 + Shewana3_1907 0.52 -2.2
2,264,161 - Shewana3_1907 0.57 -4.6
2,264,166 - Shewana3_1907 0.58 -3.5
2,264,408 - Shewana3_1907 0.80 -4.5
2,264,408 - Shewana3_1907 0.80 -3.6
2,264,408 - Shewana3_1907 0.80 -2.9
2,264,432 - Shewana3_1907 0.83 -3.7

Or see this region's nucleotide sequence