Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1280 and Shewana3_1281 overlap by 4 nucleotides Shewana3_1281 and Shewana3_1282 overlap by 4 nucleotides Shewana3_1282 and Shewana3_1283 overlap by 4 nucleotides Shewana3_1283 and Shewana3_1284 overlap by 4 nucleotides Shewana3_1284 and Shewana3_1285 are separated by 10 nucleotides
Shewana3_1280: Shewana3_1280 - conjugal transfer coupling protein TraG (RefSeq), at 1,491,078 to 1,493,075
_1280
Shewana3_1281: Shewana3_1281 - CopG/DNA-binding domain-containing protein (RefSeq), at 1,493,072 to 1,493,536
_1281
Shewana3_1282: Shewana3_1282 - type II secretion system protein E (RefSeq), at 1,493,533 to 1,494,603
_1282
Shewana3_1283: Shewana3_1283 - conjugal transfer protein TrbC (RefSeq), at 1,494,600 to 1,494,986
_1283
Shewana3_1284: Shewana3_1284 - putative conjugal transfer trbD transmembrane protein (RefSeq), at 1,494,983 to 1,495,252
_1284
Shewana3_1285: Shewana3_1285 - conjugal transfer ATPase TrbE (RefSeq), at 1,495,263 to 1,497,713
_1285
Position (kb)
1493
1494
1495 Strain fitness (log2 ratio)
-2
-1
0
1 at 1492.852 kb on - strand, within Shewana3_1280 at 1492.959 kb on - strand at 1493.016 kb on + strand at 1493.380 kb on + strand, within Shewana3_1281 at 1493.444 kb on - strand, within Shewana3_1281 at 1493.494 kb on - strand at 1493.532 kb on + strand at 1493.532 kb on + strand at 1493.532 kb on + strand at 1493.540 kb on - strand at 1493.658 kb on - strand, within Shewana3_1282 at 1493.681 kb on - strand, within Shewana3_1282 at 1493.740 kb on - strand, within Shewana3_1282 at 1493.790 kb on - strand, within Shewana3_1282 at 1493.927 kb on + strand, within Shewana3_1282 at 1493.941 kb on - strand, within Shewana3_1282 at 1494.051 kb on + strand, within Shewana3_1282 at 1494.423 kb on + strand, within Shewana3_1282 at 1494.481 kb on - strand, within Shewana3_1282 at 1494.558 kb on - strand at 1494.668 kb on + strand, within Shewana3_1283 at 1494.685 kb on + strand, within Shewana3_1283 at 1495.041 kb on + strand, within Shewana3_1284 at 1495.049 kb on - strand, within Shewana3_1284 at 1495.124 kb on + strand, within Shewana3_1284 at 1495.144 kb on + strand, within Shewana3_1284 at 1495.371 kb on - strand at 1495.398 kb on + strand at 1495.398 kb on + strand at 1495.398 kb on + strand at 1495.406 kb on - strand at 1495.406 kb on - strand at 1495.422 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 1,492,852 - Shewana3_1280 0.89 +0.1 1,492,959 - -0.4 1,493,016 + -1.1 1,493,380 + Shewana3_1281 0.66 -0.9 1,493,444 - Shewana3_1281 0.80 -0.5 1,493,494 - -1.0 1,493,532 + +0.3 1,493,532 + +0.4 1,493,532 + -0.9 1,493,540 - -0.4 1,493,658 - Shewana3_1282 0.12 -0.2 1,493,681 - Shewana3_1282 0.14 -1.7 1,493,740 - Shewana3_1282 0.19 +0.0 1,493,790 - Shewana3_1282 0.24 -1.3 1,493,927 + Shewana3_1282 0.37 +0.4 1,493,941 - Shewana3_1282 0.38 -1.6 1,494,051 + Shewana3_1282 0.48 +0.0 1,494,423 + Shewana3_1282 0.83 -0.0 1,494,481 - Shewana3_1282 0.89 -1.5 1,494,558 - +0.2 1,494,668 + Shewana3_1283 0.18 -0.9 1,494,685 + Shewana3_1283 0.22 +0.5 1,495,041 + Shewana3_1284 0.21 +0.4 1,495,049 - Shewana3_1284 0.24 -1.1 1,495,124 + Shewana3_1284 0.52 -1.4 1,495,144 + Shewana3_1284 0.60 -0.8 1,495,371 - -1.9 1,495,398 + -0.2 1,495,398 + +0.2 1,495,398 + -0.2 1,495,406 - +0.4 1,495,406 - +0.4 1,495,422 + +0.1
Or see this region's nucleotide sequence