Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1092

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1091 and Shewana3_1092 are separated by 264 nucleotidesShewana3_1092 and Shewana3_1093 are separated by 75 nucleotides Shewana3_1091: Shewana3_1091 - LysR family transcriptional regulator (RefSeq), at 1,284,289 to 1,285,212 _1091 Shewana3_1092: Shewana3_1092 - hypothetical protein (RefSeq), at 1,285,477 to 1,286,484 _1092 Shewana3_1093: Shewana3_1093 - putative ABC transporter ATP-binding protein (RefSeq), at 1,286,560 to 1,288,227 _1093 Position (kb) 1285 1286 1287Strain fitness (log2 ratio) -2 -1 0 1at 1284.506 kb on - strand, within Shewana3_1091at 1284.731 kb on + strand, within Shewana3_1091at 1284.904 kb on - strand, within Shewana3_1091at 1285.297 kb on - strandat 1285.568 kb on + strandat 1285.660 kb on + strand, within Shewana3_1092at 1285.724 kb on - strand, within Shewana3_1092at 1285.739 kb on + strand, within Shewana3_1092at 1286.372 kb on - strand, within Shewana3_1092at 1286.620 kb on - strandat 1286.689 kb on + strandat 1287.057 kb on - strand, within Shewana3_1093at 1287.074 kb on + strand, within Shewana3_1093at 1287.376 kb on - strand, within Shewana3_1093

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,284,506 - Shewana3_1091 0.23 +1.1
1,284,731 + Shewana3_1091 0.48 +0.2
1,284,904 - Shewana3_1091 0.67 +0.4
1,285,297 - -1.9
1,285,568 + -1.7
1,285,660 + Shewana3_1092 0.18 -0.3
1,285,724 - Shewana3_1092 0.25 +0.3
1,285,739 + Shewana3_1092 0.26 -1.5
1,286,372 - Shewana3_1092 0.89 +0.6
1,286,620 - +0.8
1,286,689 + +0.9
1,287,057 - Shewana3_1093 0.30 +1.2
1,287,074 + Shewana3_1093 0.31 -0.3
1,287,376 - Shewana3_1093 0.49 +0.5

Or see this region's nucleotide sequence