Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0801 and Shewana3_0802 are separated by 25 nucleotides Shewana3_0802 and Shewana3_0803 are separated by 6 nucleotides Shewana3_0803 and Shewana3_0804 are separated by 145 nucleotides Shewana3_0804 and Shewana3_0805 are separated by 24 nucleotides
Shewana3_0801: Shewana3_0801 - hypothetical protein (RefSeq), at 924,849 to 925,223
_0801
Shewana3_0802: Shewana3_0802 - abortive infection protein (RefSeq), at 925,249 to 926,001
_0802
Shewana3_0803: Shewana3_0803 - MORN repeat-containing protein (RefSeq), at 926,008 to 928,281
_0803
Shewana3_0804: Shewana3_0804 - cupin 2 domain-containing protein (RefSeq), at 928,427 to 928,750
_0804
Shewana3_0805: Shewana3_0805 - hypothetical protein (RefSeq), at 928,775 to 929,947
_0805
Position (kb) 926
927
928
929 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 925.394 kb on + strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.404 kb on - strand, within Shewana3_0802 at 925.404 kb on - strand, within Shewana3_0802 at 925.404 kb on - strand, within Shewana3_0802 at 925.515 kb on - strand, within Shewana3_0802 at 925.555 kb on + strand, within Shewana3_0802 at 925.563 kb on - strand, within Shewana3_0802 at 925.638 kb on - strand, within Shewana3_0802 at 925.689 kb on - strand, within Shewana3_0802 at 925.714 kb on - strand, within Shewana3_0802 at 925.850 kb on + strand, within Shewana3_0802 at 925.850 kb on + strand, within Shewana3_0802 at 925.861 kb on + strand, within Shewana3_0802 at 925.906 kb on + strand, within Shewana3_0802 at 925.939 kb on + strand at 925.939 kb on + strand at 925.983 kb on - strand at 926.032 kb on - strand at 926.064 kb on + strand at 926.201 kb on + strand at 926.357 kb on - strand, within Shewana3_0803 at 926.536 kb on + strand, within Shewana3_0803 at 926.611 kb on - strand, within Shewana3_0803 at 926.737 kb on - strand, within Shewana3_0803 at 926.855 kb on + strand, within Shewana3_0803 at 927.247 kb on - strand, within Shewana3_0803 at 927.633 kb on + strand, within Shewana3_0803 at 927.714 kb on - strand, within Shewana3_0803 at 927.814 kb on + strand, within Shewana3_0803 at 927.822 kb on - strand, within Shewana3_0803 at 927.831 kb on - strand, within Shewana3_0803 at 927.903 kb on - strand, within Shewana3_0803 at 927.903 kb on - strand, within Shewana3_0803 at 928.019 kb on + strand, within Shewana3_0803 at 928.019 kb on + strand, within Shewana3_0803 at 928.027 kb on - strand, within Shewana3_0803 at 928.027 kb on - strand, within Shewana3_0803 at 928.095 kb on - strand at 928.177 kb on - strand at 928.198 kb on + strand at 928.208 kb on + strand at 928.504 kb on + strand, within Shewana3_0804 at 928.512 kb on - strand, within Shewana3_0804 at 928.646 kb on - strand, within Shewana3_0804 at 928.646 kb on - strand, within Shewana3_0804 at 928.670 kb on - strand, within Shewana3_0804 at 928.694 kb on - strand, within Shewana3_0804 at 928.716 kb on - strand, within Shewana3_0804 at 928.920 kb on + strand, within Shewana3_0805 at 929.029 kb on + strand, within Shewana3_0805 at 929.066 kb on + strand, within Shewana3_0805
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 925,394 + Shewana3_0802 0.19 +0.8 925,402 - Shewana3_0802 0.20 -0.1 925,402 - Shewana3_0802 0.20 -1.6 925,402 - Shewana3_0802 0.20 +0.4 925,402 - Shewana3_0802 0.20 +0.3 925,404 - Shewana3_0802 0.21 +0.3 925,404 - Shewana3_0802 0.21 -0.7 925,404 - Shewana3_0802 0.21 -1.0 925,515 - Shewana3_0802 0.35 +0.1 925,555 + Shewana3_0802 0.41 +0.7 925,563 - Shewana3_0802 0.42 -1.8 925,638 - Shewana3_0802 0.52 -0.6 925,689 - Shewana3_0802 0.58 -0.8 925,714 - Shewana3_0802 0.62 -0.5 925,850 + Shewana3_0802 0.80 +0.3 925,850 + Shewana3_0802 0.80 +0.3 925,861 + Shewana3_0802 0.81 +0.7 925,906 + Shewana3_0802 0.87 +0.8 925,939 + +0.5 925,939 + +0.2 925,983 - -0.9 926,032 - +0.1 926,064 + +1.0 926,201 + -1.6 926,357 - Shewana3_0803 0.15 -1.1 926,536 + Shewana3_0803 0.23 +0.6 926,611 - Shewana3_0803 0.27 +0.2 926,737 - Shewana3_0803 0.32 -0.0 926,855 + Shewana3_0803 0.37 +0.5 927,247 - Shewana3_0803 0.54 +0.2 927,633 + Shewana3_0803 0.71 +0.8 927,714 - Shewana3_0803 0.75 +0.2 927,814 + Shewana3_0803 0.79 -1.6 927,822 - Shewana3_0803 0.80 +0.0 927,831 - Shewana3_0803 0.80 +0.4 927,903 - Shewana3_0803 0.83 +0.0 927,903 - Shewana3_0803 0.83 +0.6 928,019 + Shewana3_0803 0.88 -1.5 928,019 + Shewana3_0803 0.88 -1.5 928,027 - Shewana3_0803 0.89 -0.9 928,027 - Shewana3_0803 0.89 -0.1 928,095 - +0.2 928,177 - -2.1 928,198 + +0.2 928,208 + +0.2 928,504 + Shewana3_0804 0.24 +0.0 928,512 - Shewana3_0804 0.26 +3.1 928,646 - Shewana3_0804 0.68 +0.4 928,646 - Shewana3_0804 0.68 +0.3 928,670 - Shewana3_0804 0.75 +2.1 928,694 - Shewana3_0804 0.82 +0.7 928,716 - Shewana3_0804 0.89 -1.2 928,920 + Shewana3_0805 0.12 +0.2 929,029 + Shewana3_0805 0.22 -0.1 929,066 + Shewana3_0805 0.25 -0.4
Or see this region's nucleotide sequence