Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0087 and Shewana3_0088 are separated by 15 nucleotides Shewana3_0088 and Shewana3_0089 are separated by 62 nucleotides Shewana3_0089 and Shewana3_0090 are separated by 363 nucleotides Shewana3_0090 and Shewana3_0091 are separated by 92 nucleotides
Shewana3_0087: Shewana3_0087 - NAD(P)H dehydrogenase (quinone) (RefSeq), at 99,482 to 100,060
_0087
Shewana3_0088: Shewana3_0088 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 100,076 to 100,471
_0088
Shewana3_0089: Shewana3_0089 - 2,3-diketo-5-methylthio-1-phosphopentane phosphatase (RefSeq), at 100,534 to 101,214
_0089
Shewana3_0090: Shewana3_0090 - hypothetical protein (RefSeq), at 101,578 to 102,012
_0090
Shewana3_0091: Shewana3_0091 - hypothetical protein (RefSeq), at 102,105 to 103,118
_0091
Position (kb) 100
101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 99.751 kb on + strand, within Shewana3_0087 at 99.817 kb on - strand, within Shewana3_0087 at 100.097 kb on + strand at 100.153 kb on - strand, within Shewana3_0088 at 100.153 kb on - strand, within Shewana3_0088 at 100.170 kb on - strand, within Shewana3_0088 at 100.219 kb on + strand, within Shewana3_0088 at 100.525 kb on + strand at 100.605 kb on + strand, within Shewana3_0089 at 100.605 kb on + strand, within Shewana3_0089 at 100.640 kb on + strand, within Shewana3_0089 at 100.640 kb on + strand, within Shewana3_0089 at 100.694 kb on - strand, within Shewana3_0089 at 100.728 kb on - strand, within Shewana3_0089 at 100.827 kb on - strand, within Shewana3_0089 at 100.903 kb on + strand, within Shewana3_0089 at 100.903 kb on + strand, within Shewana3_0089 at 100.935 kb on - strand, within Shewana3_0089 at 100.969 kb on - strand, within Shewana3_0089 at 101.080 kb on + strand, within Shewana3_0089 at 101.122 kb on + strand, within Shewana3_0089 at 101.122 kb on + strand, within Shewana3_0089 at 101.169 kb on - strand at 101.188 kb on + strand at 101.196 kb on - strand at 101.268 kb on + strand at 101.325 kb on + strand at 101.388 kb on - strand at 101.420 kb on + strand at 101.428 kb on - strand at 101.536 kb on + strand at 101.611 kb on + strand at 101.696 kb on - strand, within Shewana3_0090 at 101.854 kb on + strand, within Shewana3_0090 at 101.948 kb on + strand, within Shewana3_0090 at 101.948 kb on + strand, within Shewana3_0090 at 101.956 kb on - strand, within Shewana3_0090 at 102.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 99,751 + Shewana3_0087 0.46 -1.2 99,817 - Shewana3_0087 0.58 -3.0 100,097 + -2.0 100,153 - Shewana3_0088 0.19 +0.1 100,153 - Shewana3_0088 0.19 +1.0 100,170 - Shewana3_0088 0.24 -1.9 100,219 + Shewana3_0088 0.36 +0.2 100,525 + +0.3 100,605 + Shewana3_0089 0.10 -0.1 100,605 + Shewana3_0089 0.10 -0.9 100,640 + Shewana3_0089 0.16 -0.2 100,640 + Shewana3_0089 0.16 -1.2 100,694 - Shewana3_0089 0.23 -0.8 100,728 - Shewana3_0089 0.28 -0.7 100,827 - Shewana3_0089 0.43 -2.2 100,903 + Shewana3_0089 0.54 -0.5 100,903 + Shewana3_0089 0.54 -0.5 100,935 - Shewana3_0089 0.59 -0.5 100,969 - Shewana3_0089 0.64 -0.3 101,080 + Shewana3_0089 0.80 -1.3 101,122 + Shewana3_0089 0.86 -0.5 101,122 + Shewana3_0089 0.86 -1.1 101,169 - -0.3 101,188 + -0.5 101,196 - +0.7 101,268 + +0.2 101,325 + +0.2 101,388 - -2.2 101,420 + +0.4 101,428 - -1.5 101,536 + +0.8 101,611 + +0.3 101,696 - Shewana3_0090 0.27 +0.5 101,854 + Shewana3_0090 0.63 +2.1 101,948 + Shewana3_0090 0.85 -0.2 101,948 + Shewana3_0090 0.85 +0.6 101,956 - Shewana3_0090 0.87 -0.1 102,101 - -1.6
Or see this region's nucleotide sequence