Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4158

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4157 and Shewana3_4158 are separated by 77 nucleotidesShewana3_4158 and Shewana3_4159 are separated by 336 nucleotides Shewana3_4157: Shewana3_4157 - Co/Zn/Cd efflux system component (RefSeq), at 19,416 to 20,315 _4157 Shewana3_4158: Shewana3_4158 - MerR family transcriptional regulator (RefSeq), at 20,393 to 20,800 _4158 Shewana3_4159: Shewana3_4159 - putative transposase (RefSeq), at 21,137 to 21,307 _4159 Position (kb) 20 21Strain fitness (log2 ratio) -2 -1 0 1at 19.422 kb on - strandat 19.422 kb on - strandat 19.427 kb on - strandat 19.497 kb on + strandat 19.695 kb on + strand, within Shewana3_4157at 19.695 kb on + strand, within Shewana3_4157at 19.708 kb on - strand, within Shewana3_4157at 19.983 kb on + strand, within Shewana3_4157at 20.154 kb on + strand, within Shewana3_4157at 20.157 kb on - strand, within Shewana3_4157at 20.162 kb on - strand, within Shewana3_4157at 20.162 kb on - strand, within Shewana3_4157at 20.322 kb on + strandat 20.330 kb on - strandat 20.470 kb on + strand, within Shewana3_4158at 20.470 kb on + strand, within Shewana3_4158at 20.472 kb on + strand, within Shewana3_4158at 20.478 kb on - strand, within Shewana3_4158at 20.760 kb on - strandat 20.783 kb on - strandat 21.097 kb on - strandat 21.182 kb on + strand, within Shewana3_4159at 21.356 kb on - strandat 21.377 kb on - strandat 21.458 kb on - strandat 21.537 kb on + strandat 21.633 kb on + strandat 21.650 kb on + strandat 21.716 kb on - strandat 21.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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19,422 - -0.1
19,422 - +0.4
19,427 - +0.5
19,497 + +0.1
19,695 + Shewana3_4157 0.31 +0.5
19,695 + Shewana3_4157 0.31 +0.6
19,708 - Shewana3_4157 0.32 -1.8
19,983 + Shewana3_4157 0.63 -1.0
20,154 + Shewana3_4157 0.82 +0.4
20,157 - Shewana3_4157 0.82 -0.4
20,162 - Shewana3_4157 0.83 -0.0
20,162 - Shewana3_4157 0.83 -0.6
20,322 + -0.0
20,330 - -1.0
20,470 + Shewana3_4158 0.19 -0.3
20,470 + Shewana3_4158 0.19 -1.5
20,472 + Shewana3_4158 0.19 -0.9
20,478 - Shewana3_4158 0.21 -2.5
20,760 - +0.2
20,783 - -1.2
21,097 - -0.1
21,182 + Shewana3_4159 0.26 -0.2
21,356 - +0.9
21,377 - -0.1
21,458 - -1.6
21,537 + +0.1
21,633 + +0.8
21,650 + +0.7
21,716 - -1.2
21,716 - +0.6

Or see this region's nucleotide sequence