Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4149

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4149 and Shewana3_4150 are separated by 130 nucleotidesShewana3_4150 and Shewana3_4151 are separated by 375 nucleotides Shewana3_4149: Shewana3_4149 - IS605 family transposase OrfB (RefSeq), at 10,342 to 11,445 _4149 Shewana3_4150: Shewana3_4150 - hypothetical protein (RefSeq), at 11,576 to 11,842 _4150 Shewana3_4151: Shewana3_4151 - hypothetical protein (RefSeq), at 12,218 to 12,505 _4151 Position (kb) 10 11 12Strain fitness (log2 ratio) -2 -1 0 1 2 3at 9.404 kb on - strandat 9.493 kb on - strandat 9.493 kb on - strandat 9.493 kb on - strandat 9.493 kb on - strandat 9.608 kb on + strandat 9.633 kb on - strandat 9.666 kb on - strandat 9.748 kb on + strandat 9.756 kb on - strandat 9.771 kb on + strandat 9.778 kb on - strandat 9.778 kb on - strandat 9.778 kb on - strandat 9.778 kb on - strandat 9.823 kb on - strandat 9.855 kb on - strandat 9.855 kb on - strandat 9.930 kb on + strandat 9.938 kb on - strandat 9.960 kb on - strandat 9.966 kb on + strandat 10.026 kb on - strandat 10.085 kb on + strandat 10.152 kb on - strandat 10.197 kb on - strandat 11.505 kb on + strandat 11.801 kb on + strand, within Shewana3_4150at 11.806 kb on + strand, within Shewana3_4150at 12.292 kb on - strand, within Shewana3_4151

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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9,404 - -1.2
9,493 - +0.2
9,493 - +0.1
9,493 - +0.8
9,493 - -2.4
9,608 + +0.8
9,633 - +0.6
9,666 - +0.0
9,748 + +0.9
9,756 - +0.2
9,771 + +1.4
9,778 - +0.0
9,778 - +0.2
9,778 - +0.1
9,778 - +0.9
9,823 - -0.8
9,855 - +0.4
9,855 - +0.8
9,930 + +0.4
9,938 - +0.0
9,960 - +0.8
9,966 + +0.1
10,026 - -0.1
10,085 + +1.3
10,152 - +0.3
10,197 - -0.9
11,505 + +3.4
11,801 + Shewana3_4150 0.84 -0.8
11,806 + Shewana3_4150 0.86 +0.3
12,292 - Shewana3_4151 0.26 +0.9

Or see this region's nucleotide sequence