Strain Fitness in Shewanella amazonensis SB2B around Sama_3088

Experiment: D-Mannose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose
3,663,393	+				+0.2
3,663,393	+				+0.9
3,663,393	+				-0.1
3,663,394	-				-0.6
3,663,394	-				+0.5
3,663,397	+				-1.6
3,663,397	+				-1.2
3,663,397	+				-0.1
3,663,397	+				+0.9
3,663,398	-				+0.5
3,663,398	-				+0.8
3,663,398	-				-0.7
3,663,398	-				-0.3
3,663,401	+				+1.0
3,663,401	+				+0.1
3,663,441	-				+0.1
3,663,441	-				+0.9
3,663,460	+				+1.0
3,663,819	-		Sama_3088	0.21	-2.4
3,663,840	-		Sama_3088	0.22	-2.4
3,663,840	-		Sama_3088	0.22	-2.1
3,663,884	+		Sama_3088	0.25	-1.3
3,663,884	+		Sama_3088	0.25	-2.6
3,663,884	+		Sama_3088	0.25	-3.5
3,663,884	+		Sama_3088	0.25	-2.1
3,663,884	+		Sama_3088	0.25	-3.2
3,663,884	+		Sama_3088	0.25	-2.1
3,663,885	-		Sama_3088	0.26	-2.4
3,663,885	-		Sama_3088	0.26	-3.4
3,663,885	-		Sama_3088	0.26	-3.0
3,663,885	-		Sama_3088	0.26	-2.7
3,663,918	+		Sama_3088	0.28	-3.5
3,663,918	+		Sama_3088	0.28	-2.4
3,663,991	+		Sama_3088	0.33	-3.2
3,663,991	+		Sama_3088	0.33	-2.9
3,663,991	+		Sama_3088	0.33	-3.6
3,663,991	+		Sama_3088	0.33	-1.6
3,663,991	+		Sama_3088	0.33	+0.2
3,663,991	+		Sama_3088	0.33	-1.9
3,663,991	+		Sama_3088	0.33	-3.4
3,663,991	+		Sama_3088	0.33	-0.6
3,663,992	-		Sama_3088	0.33	-3.1
3,663,992	-		Sama_3088	0.33	-2.7
3,663,992	-		Sama_3088	0.33	-1.3
3,663,992	-		Sama_3088	0.33	-1.7
3,663,992	-		Sama_3088	0.33	-2.6
3,663,992	-		Sama_3088	0.33	-2.0
3,663,992	-		Sama_3088	0.33	-3.9
3,663,992	-		Sama_3088	0.33	-3.3
3,663,992	-		Sama_3088	0.33	-1.6
3,663,992	-		Sama_3088	0.33	-2.9
3,664,014	+		Sama_3088	0.34	-3.1
3,664,014	+		Sama_3088	0.34	-2.7
3,664,014	+		Sama_3088	0.34	-2.6
3,664,014	+		Sama_3088	0.34	-1.0
3,664,015	-		Sama_3088	0.34	-3.6
3,664,185	-		Sama_3088	0.46	-2.9
3,664,313	+		Sama_3088	0.54	-0.9
3,664,314	-		Sama_3088	0.54	-1.3
3,664,314	-		Sama_3088	0.54	-2.3
3,664,314	-		Sama_3088	0.54	-2.6
3,664,368	+		Sama_3088	0.58	-2.0
3,664,368	+		Sama_3088	0.58	-1.6
3,664,368	+		Sama_3088	0.58	-2.4
3,664,368	+		Sama_3088	0.58	-2.0
3,664,369	-		Sama_3088	0.58	-3.3
3,664,369	-		Sama_3088	0.58	-0.6
3,664,369	-		Sama_3088	0.58	-1.6
3,664,369	-		Sama_3088	0.58	-1.3
3,664,369	-		Sama_3088	0.58	-1.6
3,664,369	-		Sama_3088	0.58	-1.6
3,664,369	-		Sama_3088	0.58	-2.7
3,664,373	+		Sama_3088	0.58	+0.3
3,664,374	-		Sama_3088	0.59	-2.3
3,664,417	+		Sama_3088	0.61	-1.6
3,664,418	-		Sama_3088	0.61	-2.4
3,664,418	-		Sama_3088	0.61	-3.1
3,664,424	+		Sama_3088	0.62	-2.7
3,664,436	+		Sama_3088	0.63	-2.9
3,664,436	+		Sama_3088	0.63	-2.3
3,664,437	-		Sama_3088	0.63	-2.8
3,664,437	-		Sama_3088	0.63	-1.0
3,664,437	-		Sama_3088	0.63	-2.8
3,664,442	+		Sama_3088	0.63	-1.8
3,664,443	-		Sama_3088	0.63	-2.1
3,664,465	-		Sama_3088	0.65	-2.3
3,664,465	-		Sama_3088	0.65	-2.1
3,664,465	-		Sama_3088	0.65	+0.4
3,664,465	-		Sama_3088	0.65	-1.4
3,664,545	-		Sama_3088	0.70	-3.7
3,664,597	+		Sama_3088	0.74	-1.8
3,664,597	+		Sama_3088	0.74	-1.6
3,664,598	-		Sama_3088	0.74	-2.6
3,664,680	-		Sama_3088	0.79	-2.3
3,664,722	+		Sama_3088	0.82	-2.8
3,664,722	+		Sama_3088	0.82	-2.0
3,664,722	+		Sama_3088	0.82	-2.4
3,664,723	-		Sama_3088	0.82	-2.6
3,664,730	+		Sama_3088	0.83	-2.4
3,664,730	+		Sama_3088	0.83	-1.0
3,664,742	+		Sama_3088	0.83	-2.7
3,664,742	+		Sama_3088	0.83	-2.1
3,664,808	+		Sama_3088	0.88	-3.6
3,664,808	+		Sama_3088	0.88	-2.1
3,664,808	+		Sama_3088	0.88	-2.4
3,664,808	+		Sama_3088	0.88	-1.6
3,664,809	-		Sama_3088	0.88	-2.7
3,664,809	-		Sama_3088	0.88	-2.0
3,664,827	-		Sama_3088	0.89	-3.6
3,664,827	-		Sama_3088	0.89	-1.6
3,664,919	+				-2.0
3,664,920	-				-3.3
3,664,938	+				-2.0
3,664,938	+				-2.0
3,664,939	-				-1.8
3,664,939	-				-2.3
3,664,976	+				-0.9
3,664,976	+				-1.4
3,664,976	+				-1.6
3,664,976	+				+1.2
3,664,977	-				-1.0
3,664,977	-				-0.4
3,664,977	-				-0.3
3,664,977	-				-1.4
3,664,984	+				+0.3
3,664,985	-				-1.0
3,664,985	-				-0.4
3,664,986	+				+0.1
3,664,987	-				-0.3
3,664,987	-				+0.2
3,665,019	-				+0.1
3,665,045	+				-0.3
3,665,069	+		Sama_3089	0.17	+0.8
3,665,070	-		Sama_3089	0.18	+0.6
3,665,070	-		Sama_3089	0.18	+0.0
3,665,070	-		Sama_3089	0.18	-0.6
3,665,073	+		Sama_3089	0.19	+1.4
3,665,073	+		Sama_3089	0.19	+0.2
3,665,073	+		Sama_3089	0.19	+0.2
3,665,073	+		Sama_3089	0.19	+0.2
3,665,073	+		Sama_3089	0.19	-0.1
3,665,073	+		Sama_3089	0.19	+0.2
3,665,073	+		Sama_3089	0.19	+0.1
3,665,073	+		Sama_3089	0.19	-0.5
3,665,074	-		Sama_3089	0.19	-1.0
3,665,074	-		Sama_3089	0.19	-0.0
3,665,074	-		Sama_3089	0.19	+0.0
3,665,074	-		Sama_3089	0.19	-1.6
3,665,074	-		Sama_3089	0.19	-0.2
3,665,077	+		Sama_3089	0.20	-0.4
3,665,077	+		Sama_3089	0.20	+0.2
3,665,077	+		Sama_3089	0.20	-0.3
3,665,077	+		Sama_3089	0.20	+0.0
3,665,077	+		Sama_3089	0.20	-1.3
3,665,078	-		Sama_3089	0.20	+0.0
3,665,078	-		Sama_3089	0.20	+0.3
3,665,123	+		Sama_3089	0.36	-0.5
3,665,123	+		Sama_3089	0.36	-0.6
3,665,123	+		Sama_3089	0.36	+0.4
3,665,124	-		Sama_3089	0.36	-1.0
3,665,200	+		Sama_3089	0.63	+0.6
3,665,201	-		Sama_3089	0.63	-2.0
3,665,229	+		Sama_3089	0.73	+2.0
3,665,229	+		Sama_3089	0.73	+2.0
3,665,229	+		Sama_3089	0.73	+0.7
3,665,229	+		Sama_3089	0.73	+0.6
3,665,229	+		Sama_3089	0.73	+0.5
3,665,229	+		Sama_3089	0.73	-0.3
3,665,229	+		Sama_3089	0.73	+2.0
3,665,229	+		Sama_3089	0.73	+1.3
3,665,229	+		Sama_3089	0.73	+0.2
3,665,230	-		Sama_3089	0.73	-0.4
3,665,230	-		Sama_3089	0.73	-1.8
3,665,230	-		Sama_3089	0.73	+1.0
3,665,256	-		Sama_3089	0.82	-1.3
3,665,273	+		Sama_3089	0.88	+0.0
3,665,316	+				-2.4
3,665,316	+				-1.4
3,665,317	-				-1.1
3,665,317	-				-0.4
3,665,320	+				-1.8
3,665,320	+				-0.3
3,665,320	+				-1.8
3,665,344	+				+1.0
3,665,345	-				-1.6
3,665,390	-		Sama_3090	0.18	-1.0
3,665,479	+		Sama_3090	0.38	+0.0
3,665,480	-		Sama_3090	0.39	-2.0
3,665,485	+		Sama_3090	0.40	-3.0
3,665,485	+		Sama_3090	0.40	+0.3
3,665,485	+		Sama_3090	0.40	+0.3
3,665,491	+		Sama_3090	0.41	-2.7
3,665,523	+		Sama_3090	0.48	-0.6
3,665,523	+		Sama_3090	0.48	+0.0
3,665,523	+		Sama_3090	0.48	-0.3
3,665,523	+		Sama_3090	0.48	-1.4
3,665,523	+		Sama_3090	0.48	-1.1
3,665,523	+		Sama_3090	0.48	+0.5
3,665,523	+		Sama_3090	0.48	-0.8
3,665,523	+		Sama_3090	0.48	+1.0
3,665,523	+		Sama_3090	0.48	-0.6
3,665,524	-		Sama_3090	0.48	-2.1
3,665,524	-		Sama_3090	0.48	-0.8
3,665,524	-		Sama_3090	0.48	-1.3
3,665,524	-		Sama_3090	0.48	-2.7
3,665,524	-		Sama_3090	0.48	-1.0
3,665,524	-		Sama_3090	0.48	-1.6
3,665,527	+		Sama_3090	0.49	-0.7
3,665,527	+		Sama_3090	0.49	+1.4
3,665,527	+		Sama_3090	0.49	-1.0
3,665,528	-		Sama_3090	0.49	-1.6
3,665,535	+		Sama_3090	0.51	-2.7
3,665,536	-		Sama_3090	0.51	-2.1
3,665,571	-		Sama_3090	0.59	-2.1
3,665,733	-				-0.6
3,665,739	+				-0.4
3,665,739	+				-2.6
3,665,760	+				-0.8
3,665,763	-				+0.4
3,665,807	+				+0.4
3,665,824	+				+0.0
3,665,827	+				-1.1
3,665,827	+				-1.0
3,665,827	+				-0.8
3,665,828	-				-1.0
3,665,828	-				-1.3
3,665,828	-				-1.8
3,665,880	+		Sama_3091	0.15	-0.8
3,665,881	-		Sama_3091	0.15	-2.4
3,665,886	+		Sama_3091	0.16	-1.6
3,665,887	-		Sama_3091	0.16	-0.2
3,665,890	-		Sama_3091	0.17	-0.6