Strain Fitness in Shewanella amazonensis SB2B around Sama_0767

Experiment: D-Mannose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0766 and Sama_0767 are separated by 616 nucleotidesSama_0767 and Sama_0768 are separated by 53 nucleotidesSama_0768 and Sama_0769 are separated by 253 nucleotides Sama_0766: Sama_0766 - cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq), at 949,035 to 949,634 _0766 Sama_0767: Sama_0767 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 950,251 to 951,891 _0767 Sama_0768: Sama_0768 - hypothetical protein (RefSeq), at 951,945 to 952,535 _0768 Sama_0769: Sama_0769 - UDP-N-acetylmuramate (RefSeq), at 952,789 to 954,165 _0769 Position (kb) 950 951 952Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 949.316 kb on + strand, within Sama_0766at 949.316 kb on + strand, within Sama_0766at 949.316 kb on + strand, within Sama_0766at 949.317 kb on - strand, within Sama_0766at 949.412 kb on + strand, within Sama_0766at 949.412 kb on + strand, within Sama_0766at 949.413 kb on - strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.434 kb on + strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.435 kb on - strand, within Sama_0766at 949.436 kb on + strand, within Sama_0766at 949.436 kb on + strand, within Sama_0766at 949.436 kb on + strand, within Sama_0766at 949.436 kb on + strand, within Sama_0766at 949.436 kb on + strand, within Sama_0766at 949.436 kb on + strand, within Sama_0766at 949.437 kb on - strand, within Sama_0766at 949.437 kb on - strand, within Sama_0766at 949.437 kb on - strand, within Sama_0766at 949.437 kb on - strand, within Sama_0766at 949.437 kb on - strand, within Sama_0766at 949.446 kb on + strand, within Sama_0766at 949.446 kb on + strand, within Sama_0766at 949.446 kb on + strand, within Sama_0766at 949.446 kb on + strand, within Sama_0766at 949.447 kb on - strand, within Sama_0766at 949.447 kb on - strand, within Sama_0766at 949.447 kb on - strand, within Sama_0766at 949.447 kb on - strand, within Sama_0766at 949.447 kb on - strand, within Sama_0766at 949.452 kb on + strand, within Sama_0766at 949.474 kb on + strand, within Sama_0766at 949.474 kb on + strand, within Sama_0766at 949.474 kb on + strand, within Sama_0766at 949.526 kb on + strand, within Sama_0766at 949.527 kb on - strand, within Sama_0766at 949.606 kb on + strandat 949.607 kb on - strandat 949.607 kb on - strandat 949.629 kb on + strandat 949.693 kb on + strandat 949.693 kb on + strandat 949.693 kb on + strandat 949.702 kb on + strandat 949.702 kb on + strandat 949.819 kb on - strandat 949.828 kb on - strandat 949.828 kb on - strandat 949.828 kb on - strandat 949.828 kb on - strandat 949.828 kb on - strandat 949.945 kb on + strandat 949.945 kb on + strandat 949.948 kb on + strandat 949.948 kb on + strandat 949.948 kb on + strandat 949.948 kb on + strandat 949.949 kb on - strandat 949.949 kb on - strandat 949.949 kb on - strandat 949.949 kb on - strandat 949.949 kb on - strandat 949.949 kb on - strandat 949.975 kb on - strandat 949.975 kb on - strandat 949.975 kb on - strandat 949.980 kb on + strandat 950.110 kb on + strandat 950.110 kb on + strandat 950.111 kb on - strandat 950.111 kb on - strandat 950.134 kb on - strandat 950.134 kb on - strandat 950.204 kb on + strandat 950.250 kb on + strandat 950.250 kb on + strandat 950.250 kb on + strandat 950.251 kb on - strandat 950.300 kb on + strandat 950.301 kb on - strandat 950.340 kb on + strandat 950.345 kb on + strandat 950.345 kb on + strandat 950.346 kb on - strandat 950.438 kb on - strand, within Sama_0767at 950.464 kb on + strand, within Sama_0767at 950.464 kb on + strand, within Sama_0767at 950.464 kb on + strand, within Sama_0767at 950.464 kb on + strand, within Sama_0767at 950.464 kb on + strand, within Sama_0767at 950.465 kb on - strand, within Sama_0767at 950.465 kb on - strand, within Sama_0767at 950.502 kb on + strand, within Sama_0767at 950.502 kb on + strand, within Sama_0767at 950.506 kb on + strand, within Sama_0767at 950.506 kb on + strand, within Sama_0767at 950.507 kb on - strand, within Sama_0767at 950.507 kb on - strand, within Sama_0767at 950.581 kb on + strand, within Sama_0767at 950.624 kb on - strand, within Sama_0767at 950.699 kb on - strand, within Sama_0767at 950.699 kb on - strand, within Sama_0767at 950.699 kb on - strand, within Sama_0767at 950.700 kb on + strand, within Sama_0767at 950.700 kb on + strand, within Sama_0767at 950.700 kb on + strand, within Sama_0767at 950.714 kb on + strand, within Sama_0767at 950.714 kb on + strand, within Sama_0767at 950.714 kb on + strand, within Sama_0767at 950.714 kb on + strand, within Sama_0767at 950.715 kb on - strand, within Sama_0767at 950.715 kb on - strand, within Sama_0767at 950.715 kb on - strand, within Sama_0767at 950.715 kb on - strand, within Sama_0767at 950.747 kb on - strand, within Sama_0767at 950.747 kb on - strand, within Sama_0767at 950.747 kb on - strand, within Sama_0767at 950.768 kb on + strand, within Sama_0767at 950.844 kb on - strand, within Sama_0767at 950.844 kb on - strand, within Sama_0767at 950.858 kb on + strand, within Sama_0767at 951.053 kb on + strand, within Sama_0767at 951.255 kb on + strand, within Sama_0767at 951.256 kb on - strand, within Sama_0767at 951.256 kb on - strand, within Sama_0767at 951.256 kb on - strand, within Sama_0767at 951.262 kb on - strand, within Sama_0767at 951.382 kb on - strand, within Sama_0767at 951.434 kb on + strand, within Sama_0767at 951.542 kb on + strand, within Sama_0767at 951.544 kb on - strand, within Sama_0767at 951.544 kb on - strand, within Sama_0767at 951.600 kb on - strand, within Sama_0767at 951.651 kb on + strand, within Sama_0767at 951.652 kb on - strand, within Sama_0767at 951.816 kb on + strandat 951.853 kb on - strandat 951.853 kb on - strandat 951.889 kb on + strandat 951.890 kb on - strandat 951.901 kb on - strandat 951.947 kb on - strandat 951.999 kb on + strandat 952.008 kb on - strand, within Sama_0768at 952.176 kb on + strand, within Sama_0768at 952.177 kb on - strand, within Sama_0768at 952.177 kb on - strand, within Sama_0768at 952.177 kb on - strand, within Sama_0768at 952.261 kb on + strand, within Sama_0768at 952.573 kb on + strandat 952.617 kb on + strandat 952.617 kb on + strandat 952.618 kb on - strandat 952.618 kb on - strandat 952.724 kb on + strandat 952.724 kb on + strandat 952.724 kb on + strandat 952.725 kb on - strandat 952.729 kb on + strandat 952.729 kb on + strandat 952.768 kb on + strandat 952.796 kb on + strandat 952.796 kb on + strandat 952.796 kb on + strandat 952.796 kb on + strandat 952.797 kb on - strandat 952.891 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose
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949,316 + Sama_0766 0.47 -1.7
949,316 + Sama_0766 0.47 -1.9
949,316 + Sama_0766 0.47 -3.9
949,317 - Sama_0766 0.47 -1.4
949,412 + Sama_0766 0.63 -2.2
949,412 + Sama_0766 0.63 -2.5
949,413 - Sama_0766 0.63 -0.1
949,434 + Sama_0766 0.67 -3.2
949,434 + Sama_0766 0.67 -2.2
949,434 + Sama_0766 0.67 -0.7
949,434 + Sama_0766 0.67 -1.1
949,434 + Sama_0766 0.67 -3.3
949,434 + Sama_0766 0.67 -1.7
949,434 + Sama_0766 0.67 -3.7
949,434 + Sama_0766 0.67 -3.7
949,434 + Sama_0766 0.67 -0.7
949,434 + Sama_0766 0.67 -1.9
949,434 + Sama_0766 0.67 -1.7
949,435 - Sama_0766 0.67 -2.0
949,435 - Sama_0766 0.67 -3.4
949,435 - Sama_0766 0.67 -3.2
949,435 - Sama_0766 0.67 -1.7
949,435 - Sama_0766 0.67 -1.9
949,435 - Sama_0766 0.67 -2.9
949,435 - Sama_0766 0.67 -1.1
949,435 - Sama_0766 0.67 -1.9
949,435 - Sama_0766 0.67 -1.4
949,435 - Sama_0766 0.67 -0.7
949,435 - Sama_0766 0.67 -2.2
949,435 - Sama_0766 0.67 -2.2
949,435 - Sama_0766 0.67 -3.8
949,435 - Sama_0766 0.67 -1.1
949,435 - Sama_0766 0.67 -2.2
949,436 + Sama_0766 0.67 -1.9
949,436 + Sama_0766 0.67 -1.1
949,436 + Sama_0766 0.67 -1.1
949,436 + Sama_0766 0.67 -2.1
949,436 + Sama_0766 0.67 -1.1
949,436 + Sama_0766 0.67 -3.6
949,437 - Sama_0766 0.67 -1.7
949,437 - Sama_0766 0.67 -3.3
949,437 - Sama_0766 0.67 -3.3
949,437 - Sama_0766 0.67 -3.9
949,437 - Sama_0766 0.67 -3.1
949,446 + Sama_0766 0.69 -3.9
949,446 + Sama_0766 0.69 -0.7
949,446 + Sama_0766 0.69 -3.5
949,446 + Sama_0766 0.69 +0.3
949,447 - Sama_0766 0.69 -2.1
949,447 - Sama_0766 0.69 -3.9
949,447 - Sama_0766 0.69 -3.2
949,447 - Sama_0766 0.69 -2.2
949,447 - Sama_0766 0.69 -4.2
949,452 + Sama_0766 0.69 -3.7
949,474 + Sama_0766 0.73 -3.4
949,474 + Sama_0766 0.73 -3.0
949,474 + Sama_0766 0.73 -2.8
949,526 + Sama_0766 0.82 -4.9
949,527 - Sama_0766 0.82 -3.7
949,606 + -3.2
949,607 - -1.4
949,607 - -2.6
949,629 + -1.8
949,693 + +0.4
949,693 + -0.5
949,693 + +0.4
949,702 + -0.2
949,702 + +0.8
949,819 - +0.9
949,828 - +2.3
949,828 - +0.4
949,828 - -0.1
949,828 - +0.4
949,828 - -0.2
949,945 + +0.0
949,945 + +1.5
949,948 + -0.8
949,948 + -0.2
949,948 + +1.7
949,948 + +0.1
949,949 - -0.4
949,949 - +0.1
949,949 - -0.8
949,949 - +1.4
949,949 - -0.3
949,949 - -0.4
949,975 - -1.0
949,975 - +1.1
949,975 - -0.1
949,980 + -0.0
950,110 + -0.3
950,110 + +0.6
950,111 - +0.9
950,111 - -0.7
950,134 - +0.0
950,134 - -1.2
950,204 + -0.1
950,250 + +0.8
950,250 + +0.1
950,250 + +0.0
950,251 - +0.4
950,300 + -0.4
950,301 - +0.3
950,340 + +0.5
950,345 + -0.1
950,345 + -0.3
950,346 - +0.9
950,438 - Sama_0767 0.11 -0.2
950,464 + Sama_0767 0.13 +0.8
950,464 + Sama_0767 0.13 -2.4
950,464 + Sama_0767 0.13 +0.4
950,464 + Sama_0767 0.13 +1.5
950,464 + Sama_0767 0.13 +1.2
950,465 - Sama_0767 0.13 +0.2
950,465 - Sama_0767 0.13 +1.0
950,502 + Sama_0767 0.15 -0.3
950,502 + Sama_0767 0.15 -0.1
950,506 + Sama_0767 0.16 -0.1
950,506 + Sama_0767 0.16 -1.4
950,507 - Sama_0767 0.16 -0.3
950,507 - Sama_0767 0.16 +0.4
950,581 + Sama_0767 0.20 +0.6
950,624 - Sama_0767 0.23 -1.9
950,699 - Sama_0767 0.27 +1.1
950,699 - Sama_0767 0.27 +0.0
950,699 - Sama_0767 0.27 -0.3
950,700 + Sama_0767 0.27 +0.1
950,700 + Sama_0767 0.27 +1.1
950,700 + Sama_0767 0.27 +0.4
950,714 + Sama_0767 0.28 +0.5
950,714 + Sama_0767 0.28 -0.7
950,714 + Sama_0767 0.28 +0.6
950,714 + Sama_0767 0.28 -1.3
950,715 - Sama_0767 0.28 -0.3
950,715 - Sama_0767 0.28 -1.3
950,715 - Sama_0767 0.28 +0.4
950,715 - Sama_0767 0.28 +0.4
950,747 - Sama_0767 0.30 -2.3
950,747 - Sama_0767 0.30 -0.4
950,747 - Sama_0767 0.30 +0.9
950,768 + Sama_0767 0.32 +0.5
950,844 - Sama_0767 0.36 -0.3
950,844 - Sama_0767 0.36 -0.1
950,858 + Sama_0767 0.37 +0.7
951,053 + Sama_0767 0.49 -0.2
951,255 + Sama_0767 0.61 +0.7
951,256 - Sama_0767 0.61 -0.0
951,256 - Sama_0767 0.61 -0.9
951,256 - Sama_0767 0.61 +0.6
951,262 - Sama_0767 0.62 -2.7
951,382 - Sama_0767 0.69 +0.7
951,434 + Sama_0767 0.72 -0.6
951,542 + Sama_0767 0.79 +0.4
951,544 - Sama_0767 0.79 +0.9
951,544 - Sama_0767 0.79 -0.9
951,600 - Sama_0767 0.82 +0.7
951,651 + Sama_0767 0.85 +0.0
951,652 - Sama_0767 0.85 -0.5
951,816 + -1.5
951,853 - -1.5
951,853 - -0.1
951,889 + -1.1
951,890 - +0.7
951,901 - -1.4
951,947 - -0.3
951,999 + -0.8
952,008 - Sama_0768 0.11 -1.1
952,176 + Sama_0768 0.39 -0.1
952,177 - Sama_0768 0.39 -0.3
952,177 - Sama_0768 0.39 +0.5
952,177 - Sama_0768 0.39 -0.2
952,261 + Sama_0768 0.53 -0.2
952,573 + -1.2
952,617 + -0.5
952,617 + -0.8
952,618 - +0.3
952,618 - +0.8
952,724 + +0.8
952,724 + -1.0
952,724 + -2.4
952,725 - -0.3
952,729 + +0.5
952,729 + -0.0
952,768 + +0.1
952,796 + +0.0
952,796 + -0.5
952,796 + +0.1
952,796 + -1.1
952,797 - -0.6
952,891 + -0.6

Or see this region's nucleotide sequence