Experiment: Cobalt chloride 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1484 and Shew_1485 overlap by 23 nucleotides Shew_1485 and Shew_1486 are separated by 48 nucleotides Shew_1486 and Shew_1487 overlap by 4 nucleotides Shew_1487 and Shew_1488 are separated by 254 nucleotides
Shew_1484: Shew_1484 - cyclopropane-fatty-acyl-phospholipid synthase (RefSeq), at 1,708,852 to 1,710,132
_1484
Shew_1485: Shew_1485 - hypothetical protein (RefSeq), at 1,710,110 to 1,710,619
_1485
Shew_1486: Shew_1486 - hypothetical protein (RefSeq), at 1,710,668 to 1,711,156
_1486
Shew_1487: Shew_1487 - hypothetical protein (RefSeq), at 1,711,153 to 1,711,686
_1487
Shew_1488: Shew_1488 - FAD linked oxidase domain-containing protein (RefSeq), at 1,711,941 to 1,713,326
_1488
Position (kb)
1710
1711
1712 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1709.911 kb on - strand, within Shew_1484 at 1710.065 kb on + strand at 1710.198 kb on + strand, within Shew_1485 at 1710.212 kb on + strand, within Shew_1485 at 1710.482 kb on - strand, within Shew_1485 at 1710.516 kb on + strand, within Shew_1485 at 1710.538 kb on + strand, within Shew_1485 at 1710.546 kb on - strand, within Shew_1485 at 1710.727 kb on - strand, within Shew_1486 at 1710.796 kb on - strand, within Shew_1486 at 1710.801 kb on - strand, within Shew_1486 at 1711.001 kb on - strand, within Shew_1486 at 1711.130 kb on - strand at 1711.306 kb on - strand, within Shew_1487 at 1711.427 kb on + strand, within Shew_1487 at 1711.524 kb on - strand, within Shew_1487 at 1711.643 kb on + strand at 1711.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM remove 1,709,911 - Shew_1484 0.83 +1.8 1,710,065 + +0.1 1,710,198 + Shew_1485 0.17 +2.8 1,710,212 + Shew_1485 0.20 +0.1 1,710,482 - Shew_1485 0.73 +0.6 1,710,516 + Shew_1485 0.80 -0.2 1,710,538 + Shew_1485 0.84 -0.4 1,710,546 - Shew_1485 0.85 +0.6 1,710,727 - Shew_1486 0.12 -0.4 1,710,796 - Shew_1486 0.26 -1.4 1,710,801 - Shew_1486 0.27 -0.7 1,711,001 - Shew_1486 0.68 -0.9 1,711,130 - -0.2 1,711,306 - Shew_1487 0.29 +1.8 1,711,427 + Shew_1487 0.51 +1.7 1,711,524 - Shew_1487 0.69 +0.6 1,711,643 + +0.5 1,711,858 + +0.9
Or see this region's nucleotide sequence