Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4163

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4162 and Dshi_4163 overlap by 4 nucleotidesDshi_4163 and Dshi_4164 overlap by 4 nucleotidesDshi_4164 and Dshi_4165 overlap by 11 nucleotides Dshi_4162: Dshi_4162 - glycosyl transferase group 1 (RefSeq), at 9,725 to 10,768 _4162 Dshi_4163: Dshi_4163 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 10,765 to 12,342 _4163 Dshi_4164: Dshi_4164 - ABC transporter related (RefSeq), at 12,339 to 13,145 _4164 Dshi_4165: Dshi_4165 - NMT1/THI5 like domain protein (RefSeq), at 13,135 to 14,130 _4165 Position (kb) 10 11 12 13Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 10.045 kb on - strand, within Dshi_4162at 10.362 kb on + strand, within Dshi_4162at 10.371 kb on - strand, within Dshi_4162at 10.845 kb on + strandat 11.084 kb on - strand, within Dshi_4163at 11.108 kb on - strandat 11.169 kb on + strand, within Dshi_4163at 11.177 kb on - strand, within Dshi_4163at 11.383 kb on + strand, within Dshi_4163at 11.663 kb on - strand, within Dshi_4163at 11.731 kb on - strand, within Dshi_4163at 11.771 kb on - strand, within Dshi_4163at 11.883 kb on - strand, within Dshi_4163at 11.898 kb on - strand, within Dshi_4163at 12.399 kb on - strandat 12.488 kb on + strand, within Dshi_4164at 12.536 kb on - strand, within Dshi_4164at 12.845 kb on + strand, within Dshi_4164at 12.955 kb on - strand, within Dshi_4164at 13.142 kb on + strandat 13.142 kb on + strandat 13.150 kb on - strandat 13.272 kb on + strand, within Dshi_4165at 13.272 kb on + strand, within Dshi_4165

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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10,045 - Dshi_4162 0.31 +3.1
10,362 + Dshi_4162 0.61 -1.8
10,371 - Dshi_4162 0.62 +0.3
10,845 + -2.0
11,084 - Dshi_4163 0.20 -3.7
11,108 - +1.9
11,169 + Dshi_4163 0.26 -0.7
11,177 - Dshi_4163 0.26 -3.9
11,383 + Dshi_4163 0.39 -1.3
11,663 - Dshi_4163 0.57 +0.3
11,731 - Dshi_4163 0.61 -0.7
11,771 - Dshi_4163 0.64 +1.3
11,883 - Dshi_4163 0.71 +3.8
11,898 - Dshi_4163 0.72 +1.9
12,399 - -0.3
12,488 + Dshi_4164 0.18 -1.3
12,536 - Dshi_4164 0.24 +1.3
12,845 + Dshi_4164 0.63 -2.7
12,955 - Dshi_4164 0.76 -2.0
13,142 + +0.3
13,142 + +2.6
13,150 - -1.7
13,272 + Dshi_4165 0.14 -0.7
13,272 + Dshi_4165 0.14 -1.7

Or see this region's nucleotide sequence