Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3832

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3830 and Dshi_3831 overlap by 4 nucleotidesDshi_3831 and Dshi_3832 are separated by 11 nucleotidesDshi_3832 and Dshi_3833 are separated by 98 nucleotides Dshi_3830: Dshi_3830 - Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) (RefSeq), at 38,247 to 39,386 _3830 Dshi_3831: Dshi_3831 - sucrose-6F-phosphate phosphohydrolase (RefSeq), at 39,383 to 40,162 _3831 Dshi_3832: Dshi_3832 - glucosylglycerol-phosphate synthase (RefSeq), at 40,174 to 41,664 _3832 Dshi_3833: Dshi_3833 - phospholipase D/Transphosphatidylase (RefSeq), at 41,763 to 43,181 _3833 Position (kb) 40 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 39.221 kb on - strand, within Dshi_3830at 39.221 kb on - strand, within Dshi_3830at 39.231 kb on - strand, within Dshi_3830at 39.277 kb on - strandat 39.277 kb on - strandat 39.399 kb on - strandat 39.406 kb on - strandat 39.444 kb on - strandat 39.454 kb on - strandat 39.595 kb on + strand, within Dshi_3831at 39.703 kb on + strand, within Dshi_3831at 39.727 kb on + strand, within Dshi_3831at 39.816 kb on + strand, within Dshi_3831at 39.887 kb on - strand, within Dshi_3831at 40.039 kb on - strand, within Dshi_3831at 40.157 kb on + strandat 40.169 kb on + strandat 40.401 kb on + strand, within Dshi_3832at 40.468 kb on - strand, within Dshi_3832at 40.478 kb on + strand, within Dshi_3832at 40.481 kb on - strand, within Dshi_3832at 40.481 kb on - strand, within Dshi_3832at 40.493 kb on + strand, within Dshi_3832at 40.501 kb on - strand, within Dshi_3832at 40.571 kb on + strand, within Dshi_3832at 40.579 kb on - strand, within Dshi_3832at 40.660 kb on + strand, within Dshi_3832at 40.710 kb on - strand, within Dshi_3832at 40.730 kb on - strand, within Dshi_3832at 40.752 kb on + strand, within Dshi_3832at 40.758 kb on - strand, within Dshi_3832at 40.855 kb on + strand, within Dshi_3832at 40.954 kb on - strand, within Dshi_3832at 41.005 kb on + strand, within Dshi_3832at 41.005 kb on + strand, within Dshi_3832at 41.013 kb on - strand, within Dshi_3832at 41.187 kb on + strand, within Dshi_3832at 41.209 kb on - strand, within Dshi_3832at 41.323 kb on + strand, within Dshi_3832at 41.425 kb on + strand, within Dshi_3832at 41.550 kb on + strandat 41.586 kb on + strandat 41.587 kb on - strandat 41.606 kb on + strandat 41.708 kb on + strandat 41.727 kb on + strandat 41.727 kb on + strandat 41.842 kb on - strandat 41.985 kb on - strand, within Dshi_3833at 42.084 kb on + strand, within Dshi_3833at 42.110 kb on - strand, within Dshi_3833at 42.110 kb on - strand, within Dshi_3833at 42.330 kb on + strand, within Dshi_3833at 42.429 kb on - strand, within Dshi_3833at 42.456 kb on + strand, within Dshi_3833at 42.542 kb on + strand, within Dshi_3833at 42.593 kb on + strand, within Dshi_3833at 42.593 kb on + strand, within Dshi_3833

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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39,221 - Dshi_3830 0.85 +0.2
39,221 - Dshi_3830 0.85 -1.7
39,231 - Dshi_3830 0.86 -3.3
39,277 - +0.4
39,277 - -0.3
39,399 - -1.2
39,406 - +0.3
39,444 - -1.3
39,454 - +1.5
39,595 + Dshi_3831 0.27 +0.5
39,703 + Dshi_3831 0.41 +2.6
39,727 + Dshi_3831 0.44 -0.6
39,816 + Dshi_3831 0.56 +0.3
39,887 - Dshi_3831 0.65 -3.0
40,039 - Dshi_3831 0.84 -1.6
40,157 + -0.1
40,169 + +0.3
40,401 + Dshi_3832 0.15 +0.3
40,468 - Dshi_3832 0.20 -1.3
40,478 + Dshi_3832 0.20 -1.5
40,481 - Dshi_3832 0.21 -1.5
40,481 - Dshi_3832 0.21 -0.2
40,493 + Dshi_3832 0.21 -1.8
40,501 - Dshi_3832 0.22 +1.6
40,571 + Dshi_3832 0.27 -1.4
40,579 - Dshi_3832 0.27 +0.6
40,660 + Dshi_3832 0.33 -3.6
40,710 - Dshi_3832 0.36 +0.3
40,730 - Dshi_3832 0.37 +3.3
40,752 + Dshi_3832 0.39 -3.2
40,758 - Dshi_3832 0.39 +2.3
40,855 + Dshi_3832 0.46 +1.1
40,954 - Dshi_3832 0.52 -0.1
41,005 + Dshi_3832 0.56 -0.7
41,005 + Dshi_3832 0.56 -2.1
41,013 - Dshi_3832 0.56 -1.0
41,187 + Dshi_3832 0.68 +0.3
41,209 - Dshi_3832 0.69 -1.0
41,323 + Dshi_3832 0.77 +1.3
41,425 + Dshi_3832 0.84 +0.3
41,550 + -1.3
41,586 + +1.3
41,587 - +0.7
41,606 + +1.3
41,708 + -2.3
41,727 + -1.5
41,727 + -2.1
41,842 - +0.3
41,985 - Dshi_3833 0.16 +0.3
42,084 + Dshi_3833 0.23 -1.5
42,110 - Dshi_3833 0.24 +0.1
42,110 - Dshi_3833 0.24 -0.1
42,330 + Dshi_3833 0.40 +0.3
42,429 - Dshi_3833 0.47 -1.7
42,456 + Dshi_3833 0.49 -0.5
42,542 + Dshi_3833 0.55 -0.1
42,593 + Dshi_3833 0.58 +0.3
42,593 + Dshi_3833 0.58 +0.5

Or see this region's nucleotide sequence