Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3823

Experiment: m.b. benzoic 0.32 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_3822 and Dshi_3823 are separated by 7 nucleotidesDshi_3823 and Dshi_3824 are separated by 2 nucleotides Dshi_3822: Dshi_3822 - phenylacetate-CoA oxygenase/reductase, PaaK subunit (RefSeq), at 28,782 to 29,852 _3822 Dshi_3823: Dshi_3823 - transcriptional regulator, TetR family (RefSeq), at 29,860 to 30,456 _3823 Dshi_3824: Dshi_3824 - phenylacetate-CoA ligase (RefSeq), at 30,459 to 31,769 _3824 Position (kb) 29 30 31Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 28.934 kb on + strand, within Dshi_3822at 28.939 kb on + strand, within Dshi_3822at 29.005 kb on - strand, within Dshi_3822at 29.031 kb on - strand, within Dshi_3822at 29.088 kb on - strand, within Dshi_3822at 29.091 kb on + strand, within Dshi_3822at 29.171 kb on - strand, within Dshi_3822at 29.210 kb on + strand, within Dshi_3822at 29.210 kb on + strand, within Dshi_3822at 29.218 kb on - strand, within Dshi_3822at 29.218 kb on - strand, within Dshi_3822at 29.236 kb on + strand, within Dshi_3822at 29.420 kb on - strand, within Dshi_3822at 29.565 kb on + strand, within Dshi_3822at 29.617 kb on + strand, within Dshi_3822at 29.666 kb on - strand, within Dshi_3822at 29.710 kb on - strand, within Dshi_3822at 29.739 kb on + strand, within Dshi_3822at 29.815 kb on - strandat 30.060 kb on - strand, within Dshi_3823at 30.065 kb on - strand, within Dshi_3823at 30.156 kb on + strand, within Dshi_3823at 30.171 kb on + strand, within Dshi_3823at 30.179 kb on + strand, within Dshi_3823at 30.179 kb on - strand, within Dshi_3823at 30.212 kb on + strand, within Dshi_3823at 30.259 kb on - strand, within Dshi_3823at 30.263 kb on + strand, within Dshi_3823at 30.493 kb on + strandat 30.493 kb on + strandat 30.559 kb on - strandat 30.569 kb on - strandat 30.719 kb on + strand, within Dshi_3824at 30.740 kb on + strand, within Dshi_3824at 30.825 kb on + strand, within Dshi_3824at 30.895 kb on - strand, within Dshi_3824at 30.991 kb on + strand, within Dshi_3824at 31.058 kb on - strand, within Dshi_3824at 31.113 kb on - strand, within Dshi_3824at 31.125 kb on - strand, within Dshi_3824at 31.163 kb on - strand, within Dshi_3824at 31.213 kb on - strand, within Dshi_3824at 31.233 kb on + strand, within Dshi_3824at 31.340 kb on + strand, within Dshi_3824at 31.376 kb on + strand, within Dshi_3824at 31.446 kb on + strand, within Dshi_3824

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
remove
28,934 + Dshi_3822 0.14 -0.4
28,939 + Dshi_3822 0.15 +0.9
29,005 - Dshi_3822 0.21 -3.2
29,031 - Dshi_3822 0.23 -0.1
29,088 - Dshi_3822 0.29 +0.7
29,091 + Dshi_3822 0.29 -3.2
29,171 - Dshi_3822 0.36 -1.2
29,210 + Dshi_3822 0.40 +1.3
29,210 + Dshi_3822 0.40 -1.1
29,218 - Dshi_3822 0.41 -1.7
29,218 - Dshi_3822 0.41 +1.9
29,236 + Dshi_3822 0.42 -2.4
29,420 - Dshi_3822 0.60 +2.9
29,565 + Dshi_3822 0.73 +0.6
29,617 + Dshi_3822 0.78 +1.0
29,666 - Dshi_3822 0.83 -2.3
29,710 - Dshi_3822 0.87 -2.6
29,739 + Dshi_3822 0.89 -0.1
29,815 - -1.4
30,060 - Dshi_3823 0.34 -0.7
30,065 - Dshi_3823 0.34 -0.5
30,156 + Dshi_3823 0.50 -0.9
30,171 + Dshi_3823 0.52 -0.3
30,179 + Dshi_3823 0.53 +2.3
30,179 - Dshi_3823 0.53 +2.1
30,212 + Dshi_3823 0.59 -0.1
30,259 - Dshi_3823 0.67 -3.2
30,263 + Dshi_3823 0.68 -3.3
30,493 + -0.7
30,493 + -0.1
30,559 - +1.7
30,569 - -1.5
30,719 + Dshi_3824 0.20 -0.4
30,740 + Dshi_3824 0.21 -1.6
30,825 + Dshi_3824 0.28 +0.9
30,895 - Dshi_3824 0.33 -2.3
30,991 + Dshi_3824 0.41 -0.9
31,058 - Dshi_3824 0.46 -0.7
31,113 - Dshi_3824 0.50 +0.5
31,125 - Dshi_3824 0.51 -1.5
31,163 - Dshi_3824 0.54 -1.0
31,213 - Dshi_3824 0.58 +1.3
31,233 + Dshi_3824 0.59 -3.8
31,340 + Dshi_3824 0.67 -0.7
31,376 + Dshi_3824 0.70 -1.3
31,446 + Dshi_3824 0.75 -0.6

Or see this region's nucleotide sequence