Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3822 and Dshi_3823 are separated by 7 nucleotides Dshi_3823 and Dshi_3824 are separated by 2 nucleotides
Dshi_3822: Dshi_3822 - phenylacetate-CoA oxygenase/reductase, PaaK subunit (RefSeq), at 28,782 to 29,852
_3822
Dshi_3823: Dshi_3823 - transcriptional regulator, TetR family (RefSeq), at 29,860 to 30,456
_3823
Dshi_3824: Dshi_3824 - phenylacetate-CoA ligase (RefSeq), at 30,459 to 31,769
_3824
Position (kb)
29
30
31 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 28.934 kb on + strand, within Dshi_3822 at 28.939 kb on + strand, within Dshi_3822 at 29.005 kb on - strand, within Dshi_3822 at 29.031 kb on - strand, within Dshi_3822 at 29.088 kb on - strand, within Dshi_3822 at 29.091 kb on + strand, within Dshi_3822 at 29.171 kb on - strand, within Dshi_3822 at 29.210 kb on + strand, within Dshi_3822 at 29.210 kb on + strand, within Dshi_3822 at 29.218 kb on - strand, within Dshi_3822 at 29.218 kb on - strand, within Dshi_3822 at 29.236 kb on + strand, within Dshi_3822 at 29.420 kb on - strand, within Dshi_3822 at 29.565 kb on + strand, within Dshi_3822 at 29.617 kb on + strand, within Dshi_3822 at 29.666 kb on - strand, within Dshi_3822 at 29.710 kb on - strand, within Dshi_3822 at 29.739 kb on + strand, within Dshi_3822 at 29.815 kb on - strand at 30.060 kb on - strand, within Dshi_3823 at 30.065 kb on - strand, within Dshi_3823 at 30.156 kb on + strand, within Dshi_3823 at 30.171 kb on + strand, within Dshi_3823 at 30.179 kb on + strand, within Dshi_3823 at 30.179 kb on - strand, within Dshi_3823 at 30.212 kb on + strand, within Dshi_3823 at 30.259 kb on - strand, within Dshi_3823 at 30.263 kb on + strand, within Dshi_3823 at 30.493 kb on + strand at 30.493 kb on + strand at 30.559 kb on - strand at 30.569 kb on - strand at 30.719 kb on + strand, within Dshi_3824 at 30.740 kb on + strand, within Dshi_3824 at 30.825 kb on + strand, within Dshi_3824 at 30.895 kb on - strand, within Dshi_3824 at 30.991 kb on + strand, within Dshi_3824 at 31.058 kb on - strand, within Dshi_3824 at 31.113 kb on - strand, within Dshi_3824 at 31.125 kb on - strand, within Dshi_3824 at 31.163 kb on - strand, within Dshi_3824 at 31.213 kb on - strand, within Dshi_3824 at 31.233 kb on + strand, within Dshi_3824 at 31.340 kb on + strand, within Dshi_3824 at 31.376 kb on + strand, within Dshi_3824 at 31.446 kb on + strand, within Dshi_3824
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 28,934 + Dshi_3822 0.14 -0.4 28,939 + Dshi_3822 0.15 +0.9 29,005 - Dshi_3822 0.21 -3.2 29,031 - Dshi_3822 0.23 -0.1 29,088 - Dshi_3822 0.29 +0.7 29,091 + Dshi_3822 0.29 -3.2 29,171 - Dshi_3822 0.36 -1.2 29,210 + Dshi_3822 0.40 +1.3 29,210 + Dshi_3822 0.40 -1.1 29,218 - Dshi_3822 0.41 -1.7 29,218 - Dshi_3822 0.41 +1.9 29,236 + Dshi_3822 0.42 -2.4 29,420 - Dshi_3822 0.60 +2.9 29,565 + Dshi_3822 0.73 +0.6 29,617 + Dshi_3822 0.78 +1.0 29,666 - Dshi_3822 0.83 -2.3 29,710 - Dshi_3822 0.87 -2.6 29,739 + Dshi_3822 0.89 -0.1 29,815 - -1.4 30,060 - Dshi_3823 0.34 -0.7 30,065 - Dshi_3823 0.34 -0.5 30,156 + Dshi_3823 0.50 -0.9 30,171 + Dshi_3823 0.52 -0.3 30,179 + Dshi_3823 0.53 +2.3 30,179 - Dshi_3823 0.53 +2.1 30,212 + Dshi_3823 0.59 -0.1 30,259 - Dshi_3823 0.67 -3.2 30,263 + Dshi_3823 0.68 -3.3 30,493 + -0.7 30,493 + -0.1 30,559 - +1.7 30,569 - -1.5 30,719 + Dshi_3824 0.20 -0.4 30,740 + Dshi_3824 0.21 -1.6 30,825 + Dshi_3824 0.28 +0.9 30,895 - Dshi_3824 0.33 -2.3 30,991 + Dshi_3824 0.41 -0.9 31,058 - Dshi_3824 0.46 -0.7 31,113 - Dshi_3824 0.50 +0.5 31,125 - Dshi_3824 0.51 -1.5 31,163 - Dshi_3824 0.54 -1.0 31,213 - Dshi_3824 0.58 +1.3 31,233 + Dshi_3824 0.59 -3.8 31,340 + Dshi_3824 0.67 -0.7 31,376 + Dshi_3824 0.70 -1.3 31,446 + Dshi_3824 0.75 -0.6
Or see this region's nucleotide sequence