Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3658

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3657 and Dshi_3658 are separated by 563 nucleotidesDshi_3658 and Dshi_3659 are separated by 200 nucleotidesDshi_3659 and Dshi_3660 are separated by 35 nucleotides Dshi_3657: Dshi_3657 - transposase IS3/IS911 family protein (RefSeq), at 59,693 to 60,274 _3657 Dshi_3658: Dshi_3658 - hypothetical protein (RefSeq), at 60,838 to 61,044 _3658 Dshi_3659: Dshi_3659 - hypothetical protein (RefSeq), at 61,245 to 61,547 _3659 Dshi_3660: Dshi_3660 - hypothetical protein (RefSeq), at 61,583 to 62,512 _3660 Position (kb) 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 59.866 kb on - strand, within Dshi_3657at 59.871 kb on + strand, within Dshi_3657at 59.879 kb on - strand, within Dshi_3657at 59.888 kb on - strand, within Dshi_3657at 60.034 kb on - strand, within Dshi_3657at 60.044 kb on + strand, within Dshi_3657at 60.047 kb on - strand, within Dshi_3657at 60.085 kb on + strand, within Dshi_3657at 60.093 kb on - strand, within Dshi_3657at 60.093 kb on - strand, within Dshi_3657at 60.093 kb on - strand, within Dshi_3657at 60.217 kb on - strandat 60.231 kb on + strandat 60.233 kb on + strandat 60.250 kb on - strandat 60.300 kb on - strandat 60.308 kb on + strandat 60.311 kb on - strandat 60.384 kb on + strandat 60.392 kb on - strandat 60.392 kb on - strandat 60.409 kb on + strandat 60.432 kb on + strandat 60.449 kb on + strandat 60.465 kb on - strandat 60.502 kb on + strandat 60.566 kb on + strandat 60.573 kb on - strandat 60.573 kb on - strandat 60.574 kb on - strandat 60.673 kb on + strandat 60.734 kb on - strandat 60.738 kb on + strandat 60.921 kb on + strand, within Dshi_3658at 60.979 kb on + strand, within Dshi_3658at 61.006 kb on - strand, within Dshi_3658at 61.083 kb on - strandat 61.120 kb on + strandat 61.178 kb on + strandat 61.184 kb on + strandat 61.189 kb on + strandat 61.238 kb on - strandat 61.303 kb on + strand, within Dshi_3659at 61.326 kb on - strand, within Dshi_3659at 61.377 kb on + strand, within Dshi_3659at 61.385 kb on - strand, within Dshi_3659at 61.429 kb on + strand, within Dshi_3659at 61.474 kb on + strand, within Dshi_3659at 61.474 kb on + strand, within Dshi_3659at 61.475 kb on + strand, within Dshi_3659at 61.482 kb on - strand, within Dshi_3659at 61.490 kb on - strand, within Dshi_3659at 61.560 kb on + strandat 61.575 kb on - strandat 61.589 kb on - strandat 61.604 kb on - strandat 61.757 kb on + strand, within Dshi_3660at 61.862 kb on + strand, within Dshi_3660at 61.945 kb on + strand, within Dshi_3660at 61.964 kb on + strand, within Dshi_3660

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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59,866 - Dshi_3657 0.30 -0.0
59,871 + Dshi_3657 0.31 -0.6
59,879 - Dshi_3657 0.32 -2.8
59,888 - Dshi_3657 0.34 -2.4
60,034 - Dshi_3657 0.59 -0.4
60,044 + Dshi_3657 0.60 -0.2
60,047 - Dshi_3657 0.61 -0.4
60,085 + Dshi_3657 0.67 -0.1
60,093 - Dshi_3657 0.69 -0.2
60,093 - Dshi_3657 0.69 -0.3
60,093 - Dshi_3657 0.69 +2.6
60,217 - -0.3
60,231 + -0.7
60,233 + +0.3
60,250 - +1.0
60,300 - -0.6
60,308 + -0.1
60,311 - -1.3
60,384 + +0.5
60,392 - -0.9
60,392 - -1.2
60,409 + -1.1
60,432 + -0.6
60,449 + -0.4
60,465 - -1.0
60,502 + +0.7
60,566 + +2.1
60,573 - -1.3
60,573 - -0.4
60,574 - -0.5
60,673 + +0.5
60,734 - +0.4
60,738 + +0.4
60,921 + Dshi_3658 0.40 -0.1
60,979 + Dshi_3658 0.68 -1.7
61,006 - Dshi_3658 0.81 -3.4
61,083 - +0.9
61,120 + +0.0
61,178 + -0.2
61,184 + -1.4
61,189 + -1.6
61,238 - +0.0
61,303 + Dshi_3659 0.19 -0.1
61,326 - Dshi_3659 0.27 +1.2
61,377 + Dshi_3659 0.44 +0.6
61,385 - Dshi_3659 0.46 -0.4
61,429 + Dshi_3659 0.61 +0.4
61,474 + Dshi_3659 0.76 -2.4
61,474 + Dshi_3659 0.76 -1.2
61,475 + Dshi_3659 0.76 -0.8
61,482 - Dshi_3659 0.78 -1.0
61,490 - Dshi_3659 0.81 +1.7
61,560 + -0.5
61,575 - -0.8
61,589 - -0.5
61,604 - +0.5
61,757 + Dshi_3660 0.19 +0.1
61,862 + Dshi_3660 0.30 +0.5
61,945 + Dshi_3660 0.39 +1.4
61,964 + Dshi_3660 0.41 -0.7

Or see this region's nucleotide sequence