Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3645

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3643 and Dshi_3644 overlap by 1 nucleotidesDshi_3644 and Dshi_3645 are separated by 14 nucleotidesDshi_3645 and Dshi_3646 are separated by 1 nucleotidesDshi_3646 and Dshi_3647 overlap by 4 nucleotides Dshi_3643: Dshi_3643 - Lytic transglycosylase catalytic (RefSeq), at 42,877 to 44,031 _3643 Dshi_3644: Dshi_3644 - hypothetical protein (RefSeq), at 44,031 to 44,840 _3644 Dshi_3645: Dshi_3645 - VirB8 family protein (RefSeq), at 44,855 to 45,511 _3645 Dshi_3646: Dshi_3646 - Conjugal transfer protein TrbG/VirB9/CagX (RefSeq), at 45,513 to 46,208 _3646 Dshi_3647: Dshi_3647 - conjugation TrbI family protein (RefSeq), at 46,205 to 47,584 _3647 Position (kb) 44 45 46Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 43.876 kb on + strand, within Dshi_3643at 43.876 kb on + strand, within Dshi_3643at 43.877 kb on + strand, within Dshi_3643at 43.884 kb on - strand, within Dshi_3643at 43.884 kb on - strand, within Dshi_3643at 43.885 kb on - strand, within Dshi_3643at 43.891 kb on + strand, within Dshi_3643at 43.933 kb on + strandat 43.941 kb on - strandat 43.941 kb on - strandat 43.947 kb on + strandat 43.971 kb on + strandat 44.024 kb on - strandat 44.069 kb on + strandat 44.069 kb on + strandat 44.076 kb on - strandat 44.103 kb on - strandat 44.104 kb on - strandat 44.144 kb on - strand, within Dshi_3644at 44.144 kb on - strand, within Dshi_3644at 44.236 kb on - strand, within Dshi_3644at 44.277 kb on + strand, within Dshi_3644at 44.285 kb on - strand, within Dshi_3644at 44.285 kb on - strand, within Dshi_3644at 44.342 kb on - strand, within Dshi_3644at 44.349 kb on - strand, within Dshi_3644at 44.365 kb on - strand, within Dshi_3644at 44.387 kb on + strand, within Dshi_3644at 44.387 kb on + strand, within Dshi_3644at 44.387 kb on + strand, within Dshi_3644at 44.387 kb on - strand, within Dshi_3644at 44.404 kb on + strand, within Dshi_3644at 44.422 kb on - strand, within Dshi_3644at 44.456 kb on + strand, within Dshi_3644at 44.456 kb on + strand, within Dshi_3644at 44.481 kb on + strand, within Dshi_3644at 44.516 kb on + strand, within Dshi_3644at 44.516 kb on + strand, within Dshi_3644at 44.541 kb on - strand, within Dshi_3644at 44.551 kb on - strand, within Dshi_3644at 44.561 kb on + strand, within Dshi_3644at 44.644 kb on + strand, within Dshi_3644at 44.661 kb on - strand, within Dshi_3644at 44.726 kb on + strand, within Dshi_3644at 44.734 kb on - strand, within Dshi_3644at 44.734 kb on - strand, within Dshi_3644at 44.788 kb on - strandat 44.818 kb on + strandat 44.835 kb on + strandat 44.847 kb on - strandat 44.851 kb on - strandat 44.856 kb on - strandat 44.858 kb on - strandat 44.886 kb on - strandat 44.901 kb on + strandat 44.911 kb on - strandat 44.920 kb on + strandat 44.953 kb on - strand, within Dshi_3645at 44.987 kb on + strand, within Dshi_3645at 45.022 kb on - strand, within Dshi_3645at 45.027 kb on + strand, within Dshi_3645at 45.036 kb on - strand, within Dshi_3645at 45.036 kb on - strand, within Dshi_3645at 45.052 kb on - strand, within Dshi_3645at 45.108 kb on + strand, within Dshi_3645at 45.111 kb on - strand, within Dshi_3645at 45.115 kb on + strand, within Dshi_3645at 45.116 kb on - strand, within Dshi_3645at 45.143 kb on - strand, within Dshi_3645at 45.190 kb on + strand, within Dshi_3645at 45.190 kb on - strand, within Dshi_3645at 45.192 kb on + strand, within Dshi_3645at 45.201 kb on + strand, within Dshi_3645at 45.206 kb on + strand, within Dshi_3645at 45.206 kb on + strand, within Dshi_3645at 45.209 kb on - strand, within Dshi_3645at 45.211 kb on - strand, within Dshi_3645at 45.216 kb on + strand, within Dshi_3645at 45.235 kb on - strand, within Dshi_3645at 45.235 kb on - strand, within Dshi_3645at 45.321 kb on - strand, within Dshi_3645at 45.350 kb on + strand, within Dshi_3645at 45.350 kb on + strand, within Dshi_3645at 45.351 kb on - strand, within Dshi_3645at 45.360 kb on - strand, within Dshi_3645at 45.379 kb on - strand, within Dshi_3645at 45.390 kb on - strand, within Dshi_3645at 45.390 kb on - strand, within Dshi_3645at 45.393 kb on - strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.443 kb on + strand, within Dshi_3645at 45.447 kb on + strandat 45.450 kb on - strandat 45.451 kb on - strandat 45.455 kb on - strandat 45.455 kb on - strandat 45.455 kb on - strandat 45.464 kb on - strandat 45.470 kb on - strandat 45.470 kb on - strandat 45.546 kb on + strandat 45.559 kb on + strandat 45.562 kb on - strandat 45.562 kb on - strandat 45.566 kb on - strandat 45.567 kb on - strandat 45.567 kb on - strandat 45.567 kb on - strandat 45.567 kb on - strandat 45.567 kb on - strandat 45.622 kb on + strand, within Dshi_3646at 45.622 kb on + strand, within Dshi_3646at 45.622 kb on + strand, within Dshi_3646at 45.624 kb on + strand, within Dshi_3646at 45.630 kb on - strand, within Dshi_3646at 45.630 kb on - strand, within Dshi_3646at 45.633 kb on + strand, within Dshi_3646at 45.633 kb on - strand, within Dshi_3646at 45.638 kb on + strand, within Dshi_3646at 45.640 kb on - strand, within Dshi_3646at 45.641 kb on - strand, within Dshi_3646at 45.646 kb on - strand, within Dshi_3646at 45.672 kb on - strand, within Dshi_3646at 45.795 kb on + strand, within Dshi_3646at 45.803 kb on - strand, within Dshi_3646at 45.853 kb on - strand, within Dshi_3646at 45.869 kb on + strand, within Dshi_3646at 45.882 kb on - strand, within Dshi_3646at 45.895 kb on - strand, within Dshi_3646at 45.908 kb on + strand, within Dshi_3646at 45.915 kb on + strand, within Dshi_3646at 45.923 kb on - strand, within Dshi_3646at 45.928 kb on - strand, within Dshi_3646at 45.955 kb on - strand, within Dshi_3646at 45.981 kb on - strand, within Dshi_3646at 45.989 kb on + strand, within Dshi_3646at 46.007 kb on - strand, within Dshi_3646at 46.104 kb on - strand, within Dshi_3646at 46.104 kb on - strand, within Dshi_3646at 46.104 kb on - strand, within Dshi_3646at 46.190 kb on + strandat 46.248 kb on + strandat 46.261 kb on - strandat 46.271 kb on - strandat 46.312 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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43,876 + Dshi_3643 0.86 -1.1
43,876 + Dshi_3643 0.86 +0.5
43,877 + Dshi_3643 0.87 +0.4
43,884 - Dshi_3643 0.87 -0.3
43,884 - Dshi_3643 0.87 -0.9
43,885 - Dshi_3643 0.87 +0.2
43,891 + Dshi_3643 0.88 +0.0
43,933 + +1.5
43,941 - +0.2
43,941 - -0.6
43,947 + +0.7
43,971 + -1.9
44,024 - -0.5
44,069 + -1.4
44,069 + -0.5
44,076 - -1.0
44,103 - -0.1
44,104 - +2.8
44,144 - Dshi_3644 0.14 +0.2
44,144 - Dshi_3644 0.14 -1.7
44,236 - Dshi_3644 0.25 -0.2
44,277 + Dshi_3644 0.30 +3.0
44,285 - Dshi_3644 0.31 +2.4
44,285 - Dshi_3644 0.31 -1.5
44,342 - Dshi_3644 0.38 +0.1
44,349 - Dshi_3644 0.39 +0.5
44,365 - Dshi_3644 0.41 -0.4
44,387 + Dshi_3644 0.44 -0.5
44,387 + Dshi_3644 0.44 -1.4
44,387 + Dshi_3644 0.44 -0.3
44,387 - Dshi_3644 0.44 -0.9
44,404 + Dshi_3644 0.46 -0.4
44,422 - Dshi_3644 0.48 -0.4
44,456 + Dshi_3644 0.52 -0.6
44,456 + Dshi_3644 0.52 +2.8
44,481 + Dshi_3644 0.56 -0.0
44,516 + Dshi_3644 0.60 -0.4
44,516 + Dshi_3644 0.60 -0.4
44,541 - Dshi_3644 0.63 -0.4
44,551 - Dshi_3644 0.64 -1.3
44,561 + Dshi_3644 0.65 +0.1
44,644 + Dshi_3644 0.76 -0.5
44,661 - Dshi_3644 0.78 -1.7
44,726 + Dshi_3644 0.86 +0.4
44,734 - Dshi_3644 0.87 -1.2
44,734 - Dshi_3644 0.87 -1.3
44,788 - -0.8
44,818 + -1.0
44,835 + -0.5
44,847 - +0.6
44,851 - -0.5
44,856 - +0.6
44,858 - +0.9
44,886 - -0.3
44,901 + -0.6
44,911 - -0.8
44,920 + -0.7
44,953 - Dshi_3645 0.15 +2.6
44,987 + Dshi_3645 0.20 -0.8
45,022 - Dshi_3645 0.25 -1.8
45,027 + Dshi_3645 0.26 -0.3
45,036 - Dshi_3645 0.28 +2.6
45,036 - Dshi_3645 0.28 +0.6
45,052 - Dshi_3645 0.30 -1.3
45,108 + Dshi_3645 0.39 -2.2
45,111 - Dshi_3645 0.39 -0.2
45,115 + Dshi_3645 0.40 -0.1
45,116 - Dshi_3645 0.40 -0.6
45,143 - Dshi_3645 0.44 -0.3
45,190 + Dshi_3645 0.51 -2.2
45,190 - Dshi_3645 0.51 +0.7
45,192 + Dshi_3645 0.51 +0.1
45,201 + Dshi_3645 0.53 +0.2
45,206 + Dshi_3645 0.53 -1.1
45,206 + Dshi_3645 0.53 +0.2
45,209 - Dshi_3645 0.54 -0.8
45,211 - Dshi_3645 0.54 -0.2
45,216 + Dshi_3645 0.55 -0.8
45,235 - Dshi_3645 0.58 -0.2
45,235 - Dshi_3645 0.58 +1.1
45,321 - Dshi_3645 0.71 +1.6
45,350 + Dshi_3645 0.75 +0.0
45,350 + Dshi_3645 0.75 -0.6
45,351 - Dshi_3645 0.75 +0.5
45,360 - Dshi_3645 0.77 -1.7
45,379 - Dshi_3645 0.80 -0.2
45,390 - Dshi_3645 0.81 -0.8
45,390 - Dshi_3645 0.81 +0.6
45,393 - Dshi_3645 0.82 -0.6
45,442 + Dshi_3645 0.89 +0.3
45,442 + Dshi_3645 0.89 -0.3
45,442 + Dshi_3645 0.89 -1.3
45,442 + Dshi_3645 0.89 -0.2
45,442 + Dshi_3645 0.89 -0.8
45,442 + Dshi_3645 0.89 +0.2
45,442 + Dshi_3645 0.89 -0.5
45,442 + Dshi_3645 0.89 -0.8
45,442 + Dshi_3645 0.89 -0.6
45,442 + Dshi_3645 0.89 +2.5
45,442 + Dshi_3645 0.89 -1.3
45,443 + Dshi_3645 0.89 -0.1
45,447 + -0.0
45,450 - -1.3
45,451 - -0.9
45,455 - -0.9
45,455 - +1.1
45,455 - -0.2
45,464 - +1.8
45,470 - -0.5
45,470 - -3.5
45,546 + -0.5
45,559 + -1.8
45,562 - +0.1
45,562 - -1.5
45,566 - +2.4
45,567 - -0.6
45,567 - -0.2
45,567 - -0.6
45,567 - -0.0
45,567 - -1.4
45,622 + Dshi_3646 0.16 +0.3
45,622 + Dshi_3646 0.16 -0.1
45,622 + Dshi_3646 0.16 +0.3
45,624 + Dshi_3646 0.16 -0.5
45,630 - Dshi_3646 0.17 -0.7
45,630 - Dshi_3646 0.17 -0.9
45,633 + Dshi_3646 0.17 +0.1
45,633 - Dshi_3646 0.17 -0.3
45,638 + Dshi_3646 0.18 +0.1
45,640 - Dshi_3646 0.18 +0.1
45,641 - Dshi_3646 0.18 -1.9
45,646 - Dshi_3646 0.19 -0.2
45,672 - Dshi_3646 0.23 -1.2
45,795 + Dshi_3646 0.41 +0.2
45,803 - Dshi_3646 0.42 -0.4
45,853 - Dshi_3646 0.49 +2.1
45,869 + Dshi_3646 0.51 -1.0
45,882 - Dshi_3646 0.53 -0.3
45,895 - Dshi_3646 0.55 -0.5
45,908 + Dshi_3646 0.57 -1.8
45,915 + Dshi_3646 0.58 +0.3
45,923 - Dshi_3646 0.59 +2.8
45,928 - Dshi_3646 0.60 -0.7
45,955 - Dshi_3646 0.64 -0.4
45,981 - Dshi_3646 0.67 -4.1
45,989 + Dshi_3646 0.68 -0.5
46,007 - Dshi_3646 0.71 -0.1
46,104 - Dshi_3646 0.85 +0.4
46,104 - Dshi_3646 0.85 +0.0
46,104 - Dshi_3646 0.85 -0.2
46,190 + -1.0
46,248 + -0.4
46,261 - -0.0
46,271 - +0.3
46,312 + -0.9

Or see this region's nucleotide sequence