Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3589 and Dshi_R0052 are separated by 42 nucleotides Dshi_R0052 and Dshi_3590 are separated by 275 nucleotides Dshi_3590 and Dshi_3591 are separated by 22 nucleotides
Dshi_3589: Dshi_3589 - 3'-5' exonuclease (RefSeq), at 3,779,003 to 3,779,614
_3589
Dshi_R0052: Dshi_R0052 - tRNA-Leu (RefSeq), at 3,779,657 to 3,779,743
_R0052
Dshi_3590: Dshi_3590 - NADH dehydrogenase (ubiquinone) (RefSeq), at 3,780,019 to 3,781,002
_3590
Dshi_3591: Dshi_3591 - Prenyl protease-related (RefSeq), at 3,781,025 to 3,782,716
_3591
Position (kb)
3780
3781
3782 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3779.785 kb on + strand at 3779.896 kb on + strand at 3779.897 kb on + strand at 3780.039 kb on + strand at 3780.132 kb on + strand, within Dshi_3590 at 3780.144 kb on - strand, within Dshi_3590 at 3780.208 kb on + strand, within Dshi_3590 at 3780.211 kb on - strand, within Dshi_3590 at 3780.213 kb on + strand, within Dshi_3590 at 3780.316 kb on - strand, within Dshi_3590 at 3780.331 kb on + strand, within Dshi_3590 at 3780.408 kb on + strand, within Dshi_3590 at 3780.533 kb on + strand, within Dshi_3590 at 3780.641 kb on + strand, within Dshi_3590 at 3780.664 kb on - strand, within Dshi_3590 at 3780.775 kb on - strand, within Dshi_3590 at 3780.791 kb on + strand, within Dshi_3590 at 3780.879 kb on - strand, within Dshi_3590 at 3781.031 kb on - strand at 3781.074 kb on - strand at 3781.076 kb on + strand at 3781.205 kb on + strand, within Dshi_3591 at 3781.427 kb on - strand, within Dshi_3591 at 3781.429 kb on + strand, within Dshi_3591 at 3781.430 kb on + strand, within Dshi_3591 at 3781.482 kb on + strand, within Dshi_3591 at 3781.485 kb on - strand, within Dshi_3591 at 3781.490 kb on - strand, within Dshi_3591 at 3781.490 kb on - strand, within Dshi_3591 at 3781.492 kb on + strand, within Dshi_3591 at 3781.537 kb on + strand, within Dshi_3591 at 3781.665 kb on - strand, within Dshi_3591 at 3781.716 kb on - strand, within Dshi_3591 at 3781.796 kb on + strand, within Dshi_3591 at 3781.835 kb on + strand, within Dshi_3591 at 3781.843 kb on - strand, within Dshi_3591 at 3781.888 kb on - strand, within Dshi_3591 at 3781.948 kb on + strand, within Dshi_3591
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 3,779,785 + +0.8 3,779,896 + -2.2 3,779,897 + -2.6 3,780,039 + -0.0 3,780,132 + Dshi_3590 0.11 +1.0 3,780,144 - Dshi_3590 0.13 -2.4 3,780,208 + Dshi_3590 0.19 -0.4 3,780,211 - Dshi_3590 0.20 -1.1 3,780,213 + Dshi_3590 0.20 +0.7 3,780,316 - Dshi_3590 0.30 +1.4 3,780,331 + Dshi_3590 0.32 -1.3 3,780,408 + Dshi_3590 0.40 -0.0 3,780,533 + Dshi_3590 0.52 -0.8 3,780,641 + Dshi_3590 0.63 +0.4 3,780,664 - Dshi_3590 0.66 -1.6 3,780,775 - Dshi_3590 0.77 -2.5 3,780,791 + Dshi_3590 0.78 -2.9 3,780,879 - Dshi_3590 0.87 -0.5 3,781,031 - +0.9 3,781,074 - -1.9 3,781,076 + -0.2 3,781,205 + Dshi_3591 0.11 +2.0 3,781,427 - Dshi_3591 0.24 +0.7 3,781,429 + Dshi_3591 0.24 -2.9 3,781,430 + Dshi_3591 0.24 +1.4 3,781,482 + Dshi_3591 0.27 +1.4 3,781,485 - Dshi_3591 0.27 -1.2 3,781,490 - Dshi_3591 0.27 +1.1 3,781,490 - Dshi_3591 0.27 -3.4 3,781,492 + Dshi_3591 0.28 -0.6 3,781,537 + Dshi_3591 0.30 +2.0 3,781,665 - Dshi_3591 0.38 +1.4 3,781,716 - Dshi_3591 0.41 -1.0 3,781,796 + Dshi_3591 0.46 +2.7 3,781,835 + Dshi_3591 0.48 -2.6 3,781,843 - Dshi_3591 0.48 +1.4 3,781,888 - Dshi_3591 0.51 +1.4 3,781,948 + Dshi_3591 0.55 +0.4
Or see this region's nucleotide sequence