Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3590

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3589 and Dshi_R0052 are separated by 42 nucleotidesDshi_R0052 and Dshi_3590 are separated by 275 nucleotidesDshi_3590 and Dshi_3591 are separated by 22 nucleotides Dshi_3589: Dshi_3589 - 3'-5' exonuclease (RefSeq), at 3,779,003 to 3,779,614 _3589 Dshi_R0052: Dshi_R0052 - tRNA-Leu (RefSeq), at 3,779,657 to 3,779,743 _R0052 Dshi_3590: Dshi_3590 - NADH dehydrogenase (ubiquinone) (RefSeq), at 3,780,019 to 3,781,002 _3590 Dshi_3591: Dshi_3591 - Prenyl protease-related (RefSeq), at 3,781,025 to 3,782,716 _3591 Position (kb) 3780 3781 3782Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3779.785 kb on + strandat 3779.896 kb on + strandat 3779.897 kb on + strandat 3780.039 kb on + strandat 3780.132 kb on + strand, within Dshi_3590at 3780.144 kb on - strand, within Dshi_3590at 3780.208 kb on + strand, within Dshi_3590at 3780.211 kb on - strand, within Dshi_3590at 3780.213 kb on + strand, within Dshi_3590at 3780.316 kb on - strand, within Dshi_3590at 3780.331 kb on + strand, within Dshi_3590at 3780.408 kb on + strand, within Dshi_3590at 3780.533 kb on + strand, within Dshi_3590at 3780.641 kb on + strand, within Dshi_3590at 3780.664 kb on - strand, within Dshi_3590at 3780.775 kb on - strand, within Dshi_3590at 3780.791 kb on + strand, within Dshi_3590at 3780.879 kb on - strand, within Dshi_3590at 3781.031 kb on - strandat 3781.074 kb on - strandat 3781.076 kb on + strandat 3781.205 kb on + strand, within Dshi_3591at 3781.427 kb on - strand, within Dshi_3591at 3781.429 kb on + strand, within Dshi_3591at 3781.430 kb on + strand, within Dshi_3591at 3781.482 kb on + strand, within Dshi_3591at 3781.485 kb on - strand, within Dshi_3591at 3781.490 kb on - strand, within Dshi_3591at 3781.490 kb on - strand, within Dshi_3591at 3781.492 kb on + strand, within Dshi_3591at 3781.537 kb on + strand, within Dshi_3591at 3781.665 kb on - strand, within Dshi_3591at 3781.716 kb on - strand, within Dshi_3591at 3781.796 kb on + strand, within Dshi_3591at 3781.835 kb on + strand, within Dshi_3591at 3781.843 kb on - strand, within Dshi_3591at 3781.888 kb on - strand, within Dshi_3591at 3781.948 kb on + strand, within Dshi_3591

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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3,779,785 + +0.8
3,779,896 + -2.2
3,779,897 + -2.6
3,780,039 + -0.0
3,780,132 + Dshi_3590 0.11 +1.0
3,780,144 - Dshi_3590 0.13 -2.4
3,780,208 + Dshi_3590 0.19 -0.4
3,780,211 - Dshi_3590 0.20 -1.1
3,780,213 + Dshi_3590 0.20 +0.7
3,780,316 - Dshi_3590 0.30 +1.4
3,780,331 + Dshi_3590 0.32 -1.3
3,780,408 + Dshi_3590 0.40 -0.0
3,780,533 + Dshi_3590 0.52 -0.8
3,780,641 + Dshi_3590 0.63 +0.4
3,780,664 - Dshi_3590 0.66 -1.6
3,780,775 - Dshi_3590 0.77 -2.5
3,780,791 + Dshi_3590 0.78 -2.9
3,780,879 - Dshi_3590 0.87 -0.5
3,781,031 - +0.9
3,781,074 - -1.9
3,781,076 + -0.2
3,781,205 + Dshi_3591 0.11 +2.0
3,781,427 - Dshi_3591 0.24 +0.7
3,781,429 + Dshi_3591 0.24 -2.9
3,781,430 + Dshi_3591 0.24 +1.4
3,781,482 + Dshi_3591 0.27 +1.4
3,781,485 - Dshi_3591 0.27 -1.2
3,781,490 - Dshi_3591 0.27 +1.1
3,781,490 - Dshi_3591 0.27 -3.4
3,781,492 + Dshi_3591 0.28 -0.6
3,781,537 + Dshi_3591 0.30 +2.0
3,781,665 - Dshi_3591 0.38 +1.4
3,781,716 - Dshi_3591 0.41 -1.0
3,781,796 + Dshi_3591 0.46 +2.7
3,781,835 + Dshi_3591 0.48 -2.6
3,781,843 - Dshi_3591 0.48 +1.4
3,781,888 - Dshi_3591 0.51 +1.4
3,781,948 + Dshi_3591 0.55 +0.4

Or see this region's nucleotide sequence