Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3306

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3304 and Dshi_3305 are separated by 3 nucleotidesDshi_3305 and Dshi_3306 are separated by 28 nucleotidesDshi_3306 and Dshi_3307 are separated by 161 nucleotides Dshi_3304: Dshi_3304 - hypothetical protein (RefSeq), at 3,468,555 to 3,469,358 _3304 Dshi_3305: Dshi_3305 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,469,362 to 3,470,303 _3305 Dshi_3306: Dshi_3306 - hypothetical protein (RefSeq), at 3,470,332 to 3,470,643 _3306 Dshi_3307: Dshi_3307 - domain of unknown function DUF1730 (RefSeq), at 3,470,805 to 3,471,839 _3307 Position (kb) 3470 3471Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3469.423 kb on - strandat 3469.536 kb on + strand, within Dshi_3305at 3469.543 kb on + strand, within Dshi_3305at 3469.558 kb on - strand, within Dshi_3305at 3469.608 kb on + strand, within Dshi_3305at 3469.613 kb on + strand, within Dshi_3305at 3469.621 kb on - strand, within Dshi_3305at 3469.631 kb on - strand, within Dshi_3305at 3469.648 kb on - strand, within Dshi_3305at 3469.652 kb on + strand, within Dshi_3305at 3469.693 kb on + strand, within Dshi_3305at 3469.761 kb on - strand, within Dshi_3305at 3469.895 kb on + strand, within Dshi_3305at 3470.018 kb on - strand, within Dshi_3305at 3470.062 kb on - strand, within Dshi_3305at 3470.098 kb on + strand, within Dshi_3305at 3470.106 kb on - strand, within Dshi_3305at 3470.200 kb on + strand, within Dshi_3305at 3470.272 kb on + strandat 3470.280 kb on - strandat 3470.412 kb on - strand, within Dshi_3306at 3470.423 kb on - strand, within Dshi_3306at 3470.531 kb on - strandat 3470.574 kb on - strand, within Dshi_3306at 3470.580 kb on + strand, within Dshi_3306at 3470.580 kb on + strand, within Dshi_3306at 3470.588 kb on - strand, within Dshi_3306at 3470.588 kb on - strand, within Dshi_3306at 3470.599 kb on + strand, within Dshi_3306at 3470.599 kb on + strand, within Dshi_3306at 3470.599 kb on + strand, within Dshi_3306at 3470.607 kb on - strand, within Dshi_3306at 3470.618 kb on - strandat 3470.830 kb on - strandat 3470.982 kb on - strand, within Dshi_3307at 3471.090 kb on + strand, within Dshi_3307at 3471.138 kb on + strand, within Dshi_3307at 3471.138 kb on + strand, within Dshi_3307at 3471.373 kb on - strand, within Dshi_3307at 3471.459 kb on - strand, within Dshi_3307at 3471.460 kb on - strand, within Dshi_3307at 3471.617 kb on - strand, within Dshi_3307

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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3,469,423 - -1.2
3,469,536 + Dshi_3305 0.18 +0.5
3,469,543 + Dshi_3305 0.19 -0.8
3,469,558 - Dshi_3305 0.21 +0.2
3,469,608 + Dshi_3305 0.26 -0.8
3,469,613 + Dshi_3305 0.27 -0.5
3,469,621 - Dshi_3305 0.27 +2.1
3,469,631 - Dshi_3305 0.29 -1.5
3,469,648 - Dshi_3305 0.30 -0.1
3,469,652 + Dshi_3305 0.31 -2.3
3,469,693 + Dshi_3305 0.35 -1.8
3,469,761 - Dshi_3305 0.42 -2.9
3,469,895 + Dshi_3305 0.57 +0.5
3,470,018 - Dshi_3305 0.70 -3.3
3,470,062 - Dshi_3305 0.74 +1.5
3,470,098 + Dshi_3305 0.78 +2.5
3,470,106 - Dshi_3305 0.79 -1.1
3,470,200 + Dshi_3305 0.89 +0.5
3,470,272 + -1.3
3,470,280 - -1.0
3,470,412 - Dshi_3306 0.26 +0.5
3,470,423 - Dshi_3306 0.29 +2.9
3,470,531 - +1.5
3,470,574 - Dshi_3306 0.78 -0.7
3,470,580 + Dshi_3306 0.79 +0.9
3,470,580 + Dshi_3306 0.79 -0.6
3,470,588 - Dshi_3306 0.82 +2.1
3,470,588 - Dshi_3306 0.82 +0.8
3,470,599 + Dshi_3306 0.86 -2.3
3,470,599 + Dshi_3306 0.86 +1.5
3,470,599 + Dshi_3306 0.86 -2.1
3,470,607 - Dshi_3306 0.88 +0.2
3,470,618 - +0.2
3,470,830 - -1.7
3,470,982 - Dshi_3307 0.17 +0.5
3,471,090 + Dshi_3307 0.28 -0.8
3,471,138 + Dshi_3307 0.32 +1.5
3,471,138 + Dshi_3307 0.32 +0.5
3,471,373 - Dshi_3307 0.55 -0.2
3,471,459 - Dshi_3307 0.63 +0.5
3,471,460 - Dshi_3307 0.63 +3.5
3,471,617 - Dshi_3307 0.78 -0.5

Or see this region's nucleotide sequence