Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3290 and Dshi_3291 are separated by 38 nucleotides Dshi_3291 and Dshi_3292 are separated by 29 nucleotides Dshi_3292 and Dshi_3293 are separated by 5 nucleotides Dshi_3293 and Dshi_3294 are separated by 12 nucleotides
Dshi_3290: Dshi_3290 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,456,894 to 3,457,313
_3290
Dshi_3291: Dshi_3291 - NAD-dependent epimerase/dehydratase (RefSeq), at 3,457,352 to 3,458,224
_3291
Dshi_3292: Dshi_3292 - hypothetical protein (RefSeq), at 3,458,254 to 3,459,135
_3292
Dshi_3293: Dshi_3293 - hypothetical protein (RefSeq), at 3,459,141 to 3,459,959
_3293
Dshi_3294: Dshi_3294 - deoxyxylulose-5-phosphate synthase (RefSeq), at 3,459,972 to 3,461,903
_3294
Position (kb)
3458
3459
3460 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3457.425 kb on - strand at 3457.517 kb on - strand, within Dshi_3291 at 3457.547 kb on + strand, within Dshi_3291 at 3457.600 kb on + strand, within Dshi_3291 at 3457.718 kb on - strand, within Dshi_3291 at 3457.878 kb on + strand, within Dshi_3291 at 3457.881 kb on + strand, within Dshi_3291 at 3457.953 kb on - strand, within Dshi_3291 at 3458.043 kb on - strand, within Dshi_3291 at 3458.079 kb on - strand, within Dshi_3291 at 3458.158 kb on - strand at 3458.168 kb on - strand at 3458.234 kb on - strand at 3458.252 kb on + strand at 3458.260 kb on - strand at 3458.330 kb on + strand at 3458.338 kb on - strand at 3458.471 kb on + strand, within Dshi_3292 at 3458.471 kb on + strand, within Dshi_3292 at 3458.540 kb on + strand, within Dshi_3292 at 3458.540 kb on + strand, within Dshi_3292 at 3458.548 kb on - strand, within Dshi_3292 at 3458.610 kb on + strand, within Dshi_3292 at 3458.646 kb on + strand, within Dshi_3292 at 3458.709 kb on + strand, within Dshi_3292 at 3458.888 kb on + strand, within Dshi_3292 at 3458.925 kb on + strand, within Dshi_3292 at 3458.961 kb on - strand, within Dshi_3292 at 3459.029 kb on - strand, within Dshi_3292 at 3459.112 kb on - strand at 3459.147 kb on - strand at 3459.170 kb on + strand at 3459.227 kb on + strand, within Dshi_3293 at 3459.321 kb on + strand, within Dshi_3293 at 3459.414 kb on + strand, within Dshi_3293 at 3459.523 kb on - strand, within Dshi_3293 at 3459.555 kb on - strand, within Dshi_3293 at 3459.693 kb on - strand, within Dshi_3293 at 3459.712 kb on + strand, within Dshi_3293 at 3459.755 kb on + strand, within Dshi_3293 at 3459.853 kb on + strand, within Dshi_3293 at 3459.893 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 3,457,425 - -2.9 3,457,517 - Dshi_3291 0.19 +2.8 3,457,547 + Dshi_3291 0.22 +0.5 3,457,600 + Dshi_3291 0.28 -0.6 3,457,718 - Dshi_3291 0.42 -2.5 3,457,878 + Dshi_3291 0.60 -0.5 3,457,881 + Dshi_3291 0.61 -2.8 3,457,953 - Dshi_3291 0.69 -0.1 3,458,043 - Dshi_3291 0.79 -1.5 3,458,079 - Dshi_3291 0.83 +0.3 3,458,158 - -0.5 3,458,168 - +0.1 3,458,234 - +0.5 3,458,252 + +0.3 3,458,260 - -1.5 3,458,330 + +1.7 3,458,338 - -0.5 3,458,471 + Dshi_3292 0.25 -0.5 3,458,471 + Dshi_3292 0.25 -0.3 3,458,540 + Dshi_3292 0.32 -0.7 3,458,540 + Dshi_3292 0.32 +0.7 3,458,548 - Dshi_3292 0.33 -1.7 3,458,610 + Dshi_3292 0.40 -3.4 3,458,646 + Dshi_3292 0.44 -2.4 3,458,709 + Dshi_3292 0.52 -0.9 3,458,888 + Dshi_3292 0.72 +1.3 3,458,925 + Dshi_3292 0.76 +0.1 3,458,961 - Dshi_3292 0.80 -1.5 3,459,029 - Dshi_3292 0.88 -1.2 3,459,112 - -1.3 3,459,147 - -1.5 3,459,170 + -2.1 3,459,227 + Dshi_3293 0.11 -0.2 3,459,321 + Dshi_3293 0.22 -0.4 3,459,414 + Dshi_3293 0.33 +0.0 3,459,523 - Dshi_3293 0.47 +2.1 3,459,555 - Dshi_3293 0.51 +1.5 3,459,693 - Dshi_3293 0.67 +2.3 3,459,712 + Dshi_3293 0.70 -2.7 3,459,755 + Dshi_3293 0.75 +0.5 3,459,853 + Dshi_3293 0.87 -1.3 3,459,893 + -1.3
Or see this region's nucleotide sequence