Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3292

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3290 and Dshi_3291 are separated by 38 nucleotidesDshi_3291 and Dshi_3292 are separated by 29 nucleotidesDshi_3292 and Dshi_3293 are separated by 5 nucleotidesDshi_3293 and Dshi_3294 are separated by 12 nucleotides Dshi_3290: Dshi_3290 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,456,894 to 3,457,313 _3290 Dshi_3291: Dshi_3291 - NAD-dependent epimerase/dehydratase (RefSeq), at 3,457,352 to 3,458,224 _3291 Dshi_3292: Dshi_3292 - hypothetical protein (RefSeq), at 3,458,254 to 3,459,135 _3292 Dshi_3293: Dshi_3293 - hypothetical protein (RefSeq), at 3,459,141 to 3,459,959 _3293 Dshi_3294: Dshi_3294 - deoxyxylulose-5-phosphate synthase (RefSeq), at 3,459,972 to 3,461,903 _3294 Position (kb) 3458 3459 3460Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3457.425 kb on - strandat 3457.517 kb on - strand, within Dshi_3291at 3457.547 kb on + strand, within Dshi_3291at 3457.600 kb on + strand, within Dshi_3291at 3457.718 kb on - strand, within Dshi_3291at 3457.878 kb on + strand, within Dshi_3291at 3457.881 kb on + strand, within Dshi_3291at 3457.953 kb on - strand, within Dshi_3291at 3458.043 kb on - strand, within Dshi_3291at 3458.079 kb on - strand, within Dshi_3291at 3458.158 kb on - strandat 3458.168 kb on - strandat 3458.234 kb on - strandat 3458.252 kb on + strandat 3458.260 kb on - strandat 3458.330 kb on + strandat 3458.338 kb on - strandat 3458.471 kb on + strand, within Dshi_3292at 3458.471 kb on + strand, within Dshi_3292at 3458.540 kb on + strand, within Dshi_3292at 3458.540 kb on + strand, within Dshi_3292at 3458.548 kb on - strand, within Dshi_3292at 3458.610 kb on + strand, within Dshi_3292at 3458.646 kb on + strand, within Dshi_3292at 3458.709 kb on + strand, within Dshi_3292at 3458.888 kb on + strand, within Dshi_3292at 3458.925 kb on + strand, within Dshi_3292at 3458.961 kb on - strand, within Dshi_3292at 3459.029 kb on - strand, within Dshi_3292at 3459.112 kb on - strandat 3459.147 kb on - strandat 3459.170 kb on + strandat 3459.227 kb on + strand, within Dshi_3293at 3459.321 kb on + strand, within Dshi_3293at 3459.414 kb on + strand, within Dshi_3293at 3459.523 kb on - strand, within Dshi_3293at 3459.555 kb on - strand, within Dshi_3293at 3459.693 kb on - strand, within Dshi_3293at 3459.712 kb on + strand, within Dshi_3293at 3459.755 kb on + strand, within Dshi_3293at 3459.853 kb on + strand, within Dshi_3293at 3459.893 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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3,457,425 - -2.9
3,457,517 - Dshi_3291 0.19 +2.8
3,457,547 + Dshi_3291 0.22 +0.5
3,457,600 + Dshi_3291 0.28 -0.6
3,457,718 - Dshi_3291 0.42 -2.5
3,457,878 + Dshi_3291 0.60 -0.5
3,457,881 + Dshi_3291 0.61 -2.8
3,457,953 - Dshi_3291 0.69 -0.1
3,458,043 - Dshi_3291 0.79 -1.5
3,458,079 - Dshi_3291 0.83 +0.3
3,458,158 - -0.5
3,458,168 - +0.1
3,458,234 - +0.5
3,458,252 + +0.3
3,458,260 - -1.5
3,458,330 + +1.7
3,458,338 - -0.5
3,458,471 + Dshi_3292 0.25 -0.5
3,458,471 + Dshi_3292 0.25 -0.3
3,458,540 + Dshi_3292 0.32 -0.7
3,458,540 + Dshi_3292 0.32 +0.7
3,458,548 - Dshi_3292 0.33 -1.7
3,458,610 + Dshi_3292 0.40 -3.4
3,458,646 + Dshi_3292 0.44 -2.4
3,458,709 + Dshi_3292 0.52 -0.9
3,458,888 + Dshi_3292 0.72 +1.3
3,458,925 + Dshi_3292 0.76 +0.1
3,458,961 - Dshi_3292 0.80 -1.5
3,459,029 - Dshi_3292 0.88 -1.2
3,459,112 - -1.3
3,459,147 - -1.5
3,459,170 + -2.1
3,459,227 + Dshi_3293 0.11 -0.2
3,459,321 + Dshi_3293 0.22 -0.4
3,459,414 + Dshi_3293 0.33 +0.0
3,459,523 - Dshi_3293 0.47 +2.1
3,459,555 - Dshi_3293 0.51 +1.5
3,459,693 - Dshi_3293 0.67 +2.3
3,459,712 + Dshi_3293 0.70 -2.7
3,459,755 + Dshi_3293 0.75 +0.5
3,459,853 + Dshi_3293 0.87 -1.3
3,459,893 + -1.3

Or see this region's nucleotide sequence