Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3230
Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. benzoic 0.32 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,398,383 | - | Dshi_3229 | 0.36 | -4.0 | |
3,398,487 | + | Dshi_3229 | 0.44 | -0.1 | |
3,398,523 | + | Dshi_3229 | 0.47 | +2.2 | |
3,398,577 | + | Dshi_3229 | 0.52 | -1.5 | |
3,398,625 | - | Dshi_3229 | 0.55 | -0.4 | |
3,398,709 | - | Dshi_3229 | 0.62 | -2.4 | |
3,398,923 | - | Dshi_3229 | 0.79 | -1.4 | |
3,399,033 | - | Dshi_3229 | 0.88 | +1.0 | |
3,399,079 | + | -0.8 | |||
3,399,084 | + | +1.6 | |||
3,399,092 | - | -0.4 | |||
3,399,334 | - | Dshi_3230 | 0.52 | -2.3 | |
3,399,385 | - | Dshi_3230 | 0.73 | -2.7 | |
3,399,385 | - | Dshi_3230 | 0.73 | -0.3 | |
3,399,572 | + | +0.6 | |||
3,399,579 | - | -1.2 | |||
3,399,603 | - | +0.6 | |||
3,399,690 | - | -1.6 | |||
3,399,715 | + | -1.0 | |||
3,399,791 | - | +0.0 | |||
3,399,851 | - | Dshi_3231 | 0.11 | -0.7 | |
3,399,876 | + | Dshi_3231 | 0.13 | -2.0 | |
3,399,879 | - | Dshi_3231 | 0.13 | +0.1 | |
3,400,066 | + | Dshi_3231 | 0.24 | -2.0 | |
3,400,427 | - | Dshi_3231 | 0.46 | +0.6 |
Or see this region's nucleotide sequence