Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3154
Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. benzoic 0.32 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,318,908 | - | -2.8 | |||
3,318,918 | - | -0.9 | |||
3,318,929 | - | Dshi_3153 | 0.10 | -0.4 | |
3,318,996 | + | Dshi_3153 | 0.17 | +2.6 | |
3,319,047 | - | Dshi_3153 | 0.21 | +0.1 | |
3,319,070 | - | Dshi_3153 | 0.24 | -0.4 | |
3,319,070 | - | Dshi_3153 | 0.24 | -0.3 | |
3,319,210 | - | Dshi_3153 | 0.37 | +0.6 | |
3,319,273 | + | Dshi_3153 | 0.43 | +3.0 | |
3,319,473 | - | Dshi_3153 | 0.63 | -0.9 | |
3,319,492 | - | Dshi_3153 | 0.64 | +1.0 | |
3,319,622 | - | Dshi_3153 | 0.77 | -1.8 | |
3,319,643 | - | Dshi_3153 | 0.79 | -1.1 | |
3,319,785 | - | -1.3 | |||
3,319,868 | + | +0.4 | |||
3,319,888 | - | -0.6 | |||
3,320,553 | - | -0.7 | |||
3,320,565 | + | Dshi_3155 | 0.11 | +0.6 | |
3,320,572 | - | Dshi_3155 | 0.11 | +0.6 | |
3,320,665 | - | Dshi_3155 | 0.18 | -1.7 | |
3,320,714 | - | Dshi_3155 | 0.22 | +2.6 | |
3,320,714 | - | Dshi_3155 | 0.22 | +0.0 | |
3,320,754 | - | Dshi_3155 | 0.25 | -0.0 | |
3,321,157 | - | Dshi_3155 | 0.57 | +0.6 | |
3,321,233 | + | Dshi_3155 | 0.62 | -1.9 | |
3,321,347 | - | Dshi_3155 | 0.71 | -0.6 | |
3,321,357 | + | Dshi_3155 | 0.72 | +2.6 |
Or see this region's nucleotide sequence