Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3151 and Dshi_3152 are separated by 45 nucleotides Dshi_3152 and Dshi_3153 overlap by 17 nucleotides Dshi_3153 and Dshi_3154 are separated by 22 nucleotides Dshi_3154 and Dshi_3155 overlap by 4 nucleotides
Dshi_3151: Dshi_3151 - transcriptional regulator, LysR family (RefSeq), at 3,316,985 to 3,317,893
_3151
Dshi_3152: Dshi_3152 - protein of unknown function DUF1445 (RefSeq), at 3,317,939 to 3,318,841
_3152
Dshi_3153: Dshi_3153 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 3,318,825 to 3,319,859
_3153
Dshi_3154: Dshi_3154 - TRAP transporter, transmembrane protein, putative (RefSeq), at 3,319,882 to 3,320,430
_3154
Dshi_3155: Dshi_3155 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 3,320,427 to 3,321,716
_3155
Position (kb)
3318
3319
3320 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3317.840 kb on + strand at 3317.846 kb on + strand at 3317.941 kb on + strand at 3317.990 kb on - strand at 3318.041 kb on + strand at 3318.041 kb on + strand, within Dshi_3152 at 3318.049 kb on - strand, within Dshi_3152 at 3318.049 kb on - strand, within Dshi_3152 at 3318.120 kb on - strand, within Dshi_3152 at 3318.194 kb on - strand, within Dshi_3152 at 3318.238 kb on - strand, within Dshi_3152 at 3318.253 kb on - strand, within Dshi_3152 at 3318.301 kb on + strand, within Dshi_3152 at 3318.317 kb on + strand, within Dshi_3152 at 3318.370 kb on + strand, within Dshi_3152 at 3318.442 kb on + strand, within Dshi_3152 at 3318.578 kb on + strand, within Dshi_3152 at 3318.704 kb on - strand, within Dshi_3152 at 3318.808 kb on - strand at 3318.878 kb on - strand at 3318.908 kb on - strand at 3318.918 kb on - strand at 3318.929 kb on - strand, within Dshi_3153 at 3318.996 kb on + strand, within Dshi_3153 at 3319.047 kb on - strand, within Dshi_3153 at 3319.070 kb on - strand, within Dshi_3153 at 3319.070 kb on - strand, within Dshi_3153 at 3319.210 kb on - strand, within Dshi_3153 at 3319.273 kb on + strand, within Dshi_3153 at 3319.473 kb on - strand, within Dshi_3153 at 3319.492 kb on - strand, within Dshi_3153 at 3319.622 kb on - strand, within Dshi_3153 at 3319.643 kb on - strand, within Dshi_3153 at 3319.785 kb on - strand at 3319.868 kb on + strand at 3319.888 kb on - strand at 3320.553 kb on - strand at 3320.565 kb on + strand, within Dshi_3155 at 3320.572 kb on - strand, within Dshi_3155 at 3320.665 kb on - strand, within Dshi_3155 at 3320.714 kb on - strand, within Dshi_3155 at 3320.714 kb on - strand, within Dshi_3155 at 3320.754 kb on - strand, within Dshi_3155
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 3,317,840 + +2.1 3,317,846 + -0.2 3,317,941 + -1.4 3,317,990 - -0.1 3,318,041 + +1.2 3,318,041 + Dshi_3152 0.11 -0.3 3,318,049 - Dshi_3152 0.12 +2.6 3,318,049 - Dshi_3152 0.12 +0.6 3,318,120 - Dshi_3152 0.20 -0.4 3,318,194 - Dshi_3152 0.28 -1.6 3,318,238 - Dshi_3152 0.33 -1.0 3,318,253 - Dshi_3152 0.35 +1.4 3,318,301 + Dshi_3152 0.40 +0.1 3,318,317 + Dshi_3152 0.42 +2.6 3,318,370 + Dshi_3152 0.48 -0.9 3,318,442 + Dshi_3152 0.56 +0.2 3,318,578 + Dshi_3152 0.71 -1.3 3,318,704 - Dshi_3152 0.85 +0.6 3,318,808 - -1.8 3,318,878 - +1.0 3,318,908 - -2.8 3,318,918 - -0.9 3,318,929 - Dshi_3153 0.10 -0.4 3,318,996 + Dshi_3153 0.17 +2.6 3,319,047 - Dshi_3153 0.21 +0.1 3,319,070 - Dshi_3153 0.24 -0.4 3,319,070 - Dshi_3153 0.24 -0.3 3,319,210 - Dshi_3153 0.37 +0.6 3,319,273 + Dshi_3153 0.43 +3.0 3,319,473 - Dshi_3153 0.63 -0.9 3,319,492 - Dshi_3153 0.64 +1.0 3,319,622 - Dshi_3153 0.77 -1.8 3,319,643 - Dshi_3153 0.79 -1.1 3,319,785 - -1.3 3,319,868 + +0.4 3,319,888 - -0.6 3,320,553 - -0.7 3,320,565 + Dshi_3155 0.11 +0.6 3,320,572 - Dshi_3155 0.11 +0.6 3,320,665 - Dshi_3155 0.18 -1.7 3,320,714 - Dshi_3155 0.22 +2.6 3,320,714 - Dshi_3155 0.22 +0.0 3,320,754 - Dshi_3155 0.25 -0.0
Or see this region's nucleotide sequence