Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3135 and Dshi_3136 are separated by 140 nucleotides Dshi_3136 and Dshi_3137 are separated by 7 nucleotides Dshi_3137 and Dshi_3138 overlap by 35 nucleotides
Dshi_3135: Dshi_3135 - hypothetical protein (RefSeq), at 3,302,652 to 3,303,122
_3135
Dshi_3136: Dshi_3136 - lipoprotein, putative (RefSeq), at 3,303,263 to 3,304,162
_3136
Dshi_3137: Dshi_3137 - hypothetical protein (RefSeq), at 3,304,170 to 3,304,880
_3137
Dshi_3138: Dshi_3138 - alpha/beta hydrolase fold (RefSeq), at 3,304,846 to 3,305,598
_3138
Position (kb)
3303
3304
3305 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3303.139 kb on + strand at 3303.157 kb on - strand at 3303.194 kb on - strand at 3303.196 kb on + strand at 3303.225 kb on - strand at 3303.288 kb on - strand at 3303.310 kb on + strand at 3303.402 kb on - strand, within Dshi_3136 at 3303.436 kb on + strand, within Dshi_3136 at 3303.601 kb on + strand, within Dshi_3136 at 3303.690 kb on + strand, within Dshi_3136 at 3303.705 kb on + strand, within Dshi_3136 at 3303.713 kb on - strand, within Dshi_3136 at 3303.713 kb on - strand, within Dshi_3136 at 3303.737 kb on + strand, within Dshi_3136 at 3303.927 kb on - strand, within Dshi_3136 at 3303.982 kb on - strand, within Dshi_3136 at 3304.174 kb on - strand at 3304.238 kb on + strand at 3304.259 kb on - strand, within Dshi_3137 at 3304.417 kb on - strand, within Dshi_3137 at 3304.426 kb on - strand, within Dshi_3137 at 3304.456 kb on - strand, within Dshi_3137 at 3304.555 kb on - strand at 3304.608 kb on - strand, within Dshi_3137 at 3304.819 kb on + strand at 3304.834 kb on + strand at 3304.919 kb on - strand at 3304.997 kb on - strand, within Dshi_3138 at 3305.138 kb on + strand, within Dshi_3138
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 3,303,139 + -1.0 3,303,157 - -1.2 3,303,194 - +3.2 3,303,196 + -1.2 3,303,225 - -1.2 3,303,288 - +0.1 3,303,310 + +0.9 3,303,402 - Dshi_3136 0.15 -2.5 3,303,436 + Dshi_3136 0.19 +0.6 3,303,601 + Dshi_3136 0.38 -1.5 3,303,690 + Dshi_3136 0.47 +0.4 3,303,705 + Dshi_3136 0.49 +0.3 3,303,713 - Dshi_3136 0.50 -1.4 3,303,713 - Dshi_3136 0.50 +0.0 3,303,737 + Dshi_3136 0.53 +4.1 3,303,927 - Dshi_3136 0.74 -1.1 3,303,982 - Dshi_3136 0.80 -1.0 3,304,174 - -1.7 3,304,238 + -1.4 3,304,259 - Dshi_3137 0.13 -0.6 3,304,417 - Dshi_3137 0.35 +0.3 3,304,426 - Dshi_3137 0.36 +0.2 3,304,456 - Dshi_3137 0.40 -0.6 3,304,555 - +0.6 3,304,608 - Dshi_3137 0.62 +0.6 3,304,819 + +0.6 3,304,834 + +0.6 3,304,919 - +2.2 3,304,997 - Dshi_3138 0.20 -1.0 3,305,138 + Dshi_3138 0.39 -0.6
Or see this region's nucleotide sequence