Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3136

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3135 and Dshi_3136 are separated by 140 nucleotidesDshi_3136 and Dshi_3137 are separated by 7 nucleotidesDshi_3137 and Dshi_3138 overlap by 35 nucleotides Dshi_3135: Dshi_3135 - hypothetical protein (RefSeq), at 3,302,652 to 3,303,122 _3135 Dshi_3136: Dshi_3136 - lipoprotein, putative (RefSeq), at 3,303,263 to 3,304,162 _3136 Dshi_3137: Dshi_3137 - hypothetical protein (RefSeq), at 3,304,170 to 3,304,880 _3137 Dshi_3138: Dshi_3138 - alpha/beta hydrolase fold (RefSeq), at 3,304,846 to 3,305,598 _3138 Position (kb) 3303 3304 3305Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3303.139 kb on + strandat 3303.157 kb on - strandat 3303.194 kb on - strandat 3303.196 kb on + strandat 3303.225 kb on - strandat 3303.288 kb on - strandat 3303.310 kb on + strandat 3303.402 kb on - strand, within Dshi_3136at 3303.436 kb on + strand, within Dshi_3136at 3303.601 kb on + strand, within Dshi_3136at 3303.690 kb on + strand, within Dshi_3136at 3303.705 kb on + strand, within Dshi_3136at 3303.713 kb on - strand, within Dshi_3136at 3303.713 kb on - strand, within Dshi_3136at 3303.737 kb on + strand, within Dshi_3136at 3303.927 kb on - strand, within Dshi_3136at 3303.982 kb on - strand, within Dshi_3136at 3304.174 kb on - strandat 3304.238 kb on + strandat 3304.259 kb on - strand, within Dshi_3137at 3304.417 kb on - strand, within Dshi_3137at 3304.426 kb on - strand, within Dshi_3137at 3304.456 kb on - strand, within Dshi_3137at 3304.555 kb on - strandat 3304.608 kb on - strand, within Dshi_3137at 3304.819 kb on + strandat 3304.834 kb on + strandat 3304.919 kb on - strandat 3304.997 kb on - strand, within Dshi_3138at 3305.138 kb on + strand, within Dshi_3138

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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3,303,139 + -1.0
3,303,157 - -1.2
3,303,194 - +3.2
3,303,196 + -1.2
3,303,225 - -1.2
3,303,288 - +0.1
3,303,310 + +0.9
3,303,402 - Dshi_3136 0.15 -2.5
3,303,436 + Dshi_3136 0.19 +0.6
3,303,601 + Dshi_3136 0.38 -1.5
3,303,690 + Dshi_3136 0.47 +0.4
3,303,705 + Dshi_3136 0.49 +0.3
3,303,713 - Dshi_3136 0.50 -1.4
3,303,713 - Dshi_3136 0.50 +0.0
3,303,737 + Dshi_3136 0.53 +4.1
3,303,927 - Dshi_3136 0.74 -1.1
3,303,982 - Dshi_3136 0.80 -1.0
3,304,174 - -1.7
3,304,238 + -1.4
3,304,259 - Dshi_3137 0.13 -0.6
3,304,417 - Dshi_3137 0.35 +0.3
3,304,426 - Dshi_3137 0.36 +0.2
3,304,456 - Dshi_3137 0.40 -0.6
3,304,555 - +0.6
3,304,608 - Dshi_3137 0.62 +0.6
3,304,819 + +0.6
3,304,834 + +0.6
3,304,919 - +2.2
3,304,997 - Dshi_3138 0.20 -1.0
3,305,138 + Dshi_3138 0.39 -0.6

Or see this region's nucleotide sequence