Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3084
Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. benzoic 0.32 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,253,147 | - | +0.6 | |||
3,253,181 | - | +0.1 | |||
3,253,207 | + | +0.6 | |||
3,253,238 | + | +0.6 | |||
3,253,283 | + | -1.7 | |||
3,253,311 | + | +0.6 | |||
3,253,315 | - | -2.2 | |||
3,253,334 | - | -0.9 | |||
3,253,367 | - | -0.2 | |||
3,253,386 | + | Dshi_3083 | 0.13 | -0.6 | |
3,253,417 | + | Dshi_3083 | 0.18 | -0.9 | |
3,253,561 | - | Dshi_3083 | 0.43 | -0.0 | |
3,253,571 | - | Dshi_3083 | 0.45 | +0.1 | |
3,253,709 | + | Dshi_3083 | 0.69 | -0.3 | |
3,253,790 | + | Dshi_3083 | 0.83 | +0.6 | |
3,255,063 | - | -1.4 | |||
3,255,330 | - | Dshi_3085 | 0.16 | +2.6 | |
3,255,366 | - | Dshi_3085 | 0.18 | -1.2 | |
3,255,413 | - | Dshi_3085 | 0.21 | +0.6 | |
3,255,427 | + | Dshi_3085 | 0.22 | -0.4 | |
3,255,458 | - | Dshi_3085 | 0.24 | +2.2 | |
3,255,886 | + | Dshi_3085 | 0.49 | +1.1 | |
3,255,899 | + | Dshi_3085 | 0.49 | +1.1 |
Or see this region's nucleotide sequence