Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2998

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2997 and Dshi_2998 are separated by 201 nucleotidesDshi_2998 and Dshi_2999 are separated by 144 nucleotides Dshi_2997: Dshi_2997 - Polyribonucleotide nucleotidyltransferase (RefSeq), at 3,159,996 to 3,162,131 _2997 Dshi_2998: Dshi_2998 - MscS Mechanosensitive ion channel (RefSeq), at 3,162,333 to 3,164,813 _2998 Dshi_2999: Dshi_2999 - AMP-dependent synthetase and ligase (RefSeq), at 3,164,958 to 3,166,478 _2999 Position (kb) 3162 3163 3164 3165Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3162.183 kb on + strandat 3162.213 kb on + strandat 3162.276 kb on - strandat 3162.530 kb on - strandat 3162.640 kb on + strand, within Dshi_2998at 3162.698 kb on + strand, within Dshi_2998at 3162.771 kb on - strand, within Dshi_2998at 3163.006 kb on + strand, within Dshi_2998at 3163.094 kb on - strand, within Dshi_2998at 3163.128 kb on - strand, within Dshi_2998at 3163.205 kb on + strand, within Dshi_2998at 3163.477 kb on + strand, within Dshi_2998at 3163.490 kb on - strand, within Dshi_2998at 3163.569 kb on - strand, within Dshi_2998at 3163.609 kb on - strand, within Dshi_2998at 3163.738 kb on + strand, within Dshi_2998at 3164.249 kb on - strand, within Dshi_2998at 3164.253 kb on - strand, within Dshi_2998at 3164.268 kb on - strand, within Dshi_2998at 3164.392 kb on + strand, within Dshi_2998at 3164.399 kb on - strand, within Dshi_2998at 3164.521 kb on + strand, within Dshi_2998at 3164.707 kb on + strandat 3164.817 kb on - strandat 3164.824 kb on + strandat 3164.842 kb on + strandat 3165.468 kb on - strand, within Dshi_2999at 3165.699 kb on + strand, within Dshi_2999

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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3,162,183 + +0.6
3,162,213 + +0.1
3,162,276 - -1.4
3,162,530 - +0.9
3,162,640 + Dshi_2998 0.12 +0.1
3,162,698 + Dshi_2998 0.15 +1.6
3,162,771 - Dshi_2998 0.18 +0.6
3,163,006 + Dshi_2998 0.27 +0.4
3,163,094 - Dshi_2998 0.31 -0.6
3,163,128 - Dshi_2998 0.32 -1.6
3,163,205 + Dshi_2998 0.35 +0.8
3,163,477 + Dshi_2998 0.46 -0.9
3,163,490 - Dshi_2998 0.47 -1.6
3,163,569 - Dshi_2998 0.50 +2.2
3,163,609 - Dshi_2998 0.51 +0.6
3,163,738 + Dshi_2998 0.57 +2.2
3,164,249 - Dshi_2998 0.77 -0.4
3,164,253 - Dshi_2998 0.77 +0.6
3,164,268 - Dshi_2998 0.78 -0.2
3,164,392 + Dshi_2998 0.83 -0.2
3,164,399 - Dshi_2998 0.83 +2.6
3,164,521 + Dshi_2998 0.88 -0.6
3,164,707 + -2.1
3,164,817 - -3.7
3,164,824 + -0.2
3,164,842 + -1.4
3,165,468 - Dshi_2999 0.34 +0.6
3,165,699 + Dshi_2999 0.49 +1.6

Or see this region's nucleotide sequence