Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2996 and Dshi_2997 are separated by 224 nucleotides Dshi_2997 and Dshi_2998 are separated by 201 nucleotides
Dshi_2996: Dshi_2996 - Endonuclease/exonuclease/phosphatase (RefSeq), at 3,158,863 to 3,159,771
_2996
Dshi_2997: Dshi_2997 - Polyribonucleotide nucleotidyltransferase (RefSeq), at 3,159,996 to 3,162,131
_2997
Dshi_2998: Dshi_2998 - MscS Mechanosensitive ion channel (RefSeq), at 3,162,333 to 3,164,813
_2998
Position (kb)
3159
3160
3161
3162
3163 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3159.064 kb on + strand, within Dshi_2996 at 3159.357 kb on + strand, within Dshi_2996 at 3159.365 kb on - strand, within Dshi_2996 at 3159.365 kb on - strand, within Dshi_2996 at 3159.386 kb on + strand, within Dshi_2996 at 3159.391 kb on + strand, within Dshi_2996 at 3159.391 kb on + strand, within Dshi_2996 at 3159.391 kb on + strand, within Dshi_2996 at 3159.391 kb on + strand, within Dshi_2996 at 3159.399 kb on - strand, within Dshi_2996 at 3159.399 kb on - strand, within Dshi_2996 at 3159.399 kb on - strand, within Dshi_2996 at 3159.399 kb on - strand, within Dshi_2996 at 3159.399 kb on - strand, within Dshi_2996 at 3159.410 kb on - strand, within Dshi_2996 at 3159.423 kb on - strand, within Dshi_2996 at 3159.483 kb on + strand, within Dshi_2996 at 3159.566 kb on + strand, within Dshi_2996 at 3159.567 kb on - strand, within Dshi_2996 at 3159.574 kb on - strand, within Dshi_2996 at 3159.574 kb on - strand, within Dshi_2996 at 3159.574 kb on - strand, within Dshi_2996 at 3159.613 kb on + strand, within Dshi_2996 at 3159.623 kb on + strand, within Dshi_2996 at 3159.783 kb on - strand at 3159.790 kb on + strand at 3159.790 kb on + strand at 3159.790 kb on + strand at 3159.798 kb on - strand at 3159.814 kb on + strand at 3162.183 kb on + strand at 3162.213 kb on + strand at 3162.276 kb on - strand at 3162.530 kb on - strand at 3162.640 kb on + strand, within Dshi_2998 at 3162.698 kb on + strand, within Dshi_2998 at 3162.771 kb on - strand, within Dshi_2998 at 3163.006 kb on + strand, within Dshi_2998 at 3163.094 kb on - strand, within Dshi_2998 at 3163.128 kb on - strand, within Dshi_2998
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 3,159,064 + Dshi_2996 0.22 +1.5 3,159,357 + Dshi_2996 0.54 -0.2 3,159,365 - Dshi_2996 0.55 -1.1 3,159,365 - Dshi_2996 0.55 +3.0 3,159,386 + Dshi_2996 0.58 -1.9 3,159,391 + Dshi_2996 0.58 -1.2 3,159,391 + Dshi_2996 0.58 -0.1 3,159,391 + Dshi_2996 0.58 -0.8 3,159,391 + Dshi_2996 0.58 -2.1 3,159,399 - Dshi_2996 0.59 -0.9 3,159,399 - Dshi_2996 0.59 +0.7 3,159,399 - Dshi_2996 0.59 +1.7 3,159,399 - Dshi_2996 0.59 -1.3 3,159,399 - Dshi_2996 0.59 +0.3 3,159,410 - Dshi_2996 0.60 -2.5 3,159,423 - Dshi_2996 0.62 -0.7 3,159,483 + Dshi_2996 0.68 +1.1 3,159,566 + Dshi_2996 0.77 -1.2 3,159,567 - Dshi_2996 0.77 +3.2 3,159,574 - Dshi_2996 0.78 +2.2 3,159,574 - Dshi_2996 0.78 +0.1 3,159,574 - Dshi_2996 0.78 +0.1 3,159,613 + Dshi_2996 0.83 +2.2 3,159,623 + Dshi_2996 0.84 +1.4 3,159,783 - -0.4 3,159,790 + +0.2 3,159,790 + -1.3 3,159,790 + -0.0 3,159,798 - +0.4 3,159,814 + +0.0 3,162,183 + +0.6 3,162,213 + +0.1 3,162,276 - -1.4 3,162,530 - +0.9 3,162,640 + Dshi_2998 0.12 +0.1 3,162,698 + Dshi_2998 0.15 +1.6 3,162,771 - Dshi_2998 0.18 +0.6 3,163,006 + Dshi_2998 0.27 +0.4 3,163,094 - Dshi_2998 0.31 -0.6 3,163,128 - Dshi_2998 0.32 -1.6
Or see this region's nucleotide sequence