Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2909 and Dshi_2910 are separated by 63 nucleotides Dshi_2910 and Dshi_2911 are separated by 60 nucleotides Dshi_2911 and Dshi_2912 are separated by 24 nucleotides Dshi_2912 and Dshi_2913 are separated by 133 nucleotides
Dshi_2909: Dshi_2909 - DNA polymerase I (RefSeq), at 3,067,301 to 3,070,099
_2909
Dshi_2910: Dshi_2910 - Hly-III family protein (RefSeq), at 3,070,163 to 3,070,828
_2910
Dshi_2911: Dshi_2911 - hypothetical protein (RefSeq), at 3,070,889 to 3,071,575
_2911
Dshi_2912: Dshi_2912 - hypothetical protein (RefSeq), at 3,071,600 to 3,071,788
_2912
Dshi_2913: Dshi_2913 - ABC transporter related (RefSeq), at 3,071,922 to 3,072,887
_2913
Position (kb)
3070
3071
3072 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3070.108 kb on - strand at 3070.119 kb on - strand at 3070.140 kb on - strand at 3070.189 kb on - strand at 3070.212 kb on + strand at 3070.265 kb on + strand, within Dshi_2910 at 3070.267 kb on - strand, within Dshi_2910 at 3070.280 kb on - strand, within Dshi_2910 at 3070.302 kb on + strand, within Dshi_2910 at 3070.310 kb on - strand, within Dshi_2910 at 3070.324 kb on - strand, within Dshi_2910 at 3070.328 kb on - strand, within Dshi_2910 at 3070.508 kb on + strand, within Dshi_2910 at 3070.528 kb on - strand, within Dshi_2910 at 3070.686 kb on + strand, within Dshi_2910 at 3070.880 kb on + strand at 3070.957 kb on + strand at 3070.960 kb on - strand, within Dshi_2911 at 3070.975 kb on - strand, within Dshi_2911 at 3071.015 kb on - strand, within Dshi_2911 at 3071.079 kb on - strand, within Dshi_2911 at 3071.087 kb on - strand, within Dshi_2911 at 3071.155 kb on + strand, within Dshi_2911 at 3071.179 kb on + strand, within Dshi_2911 at 3071.366 kb on + strand, within Dshi_2911 at 3071.408 kb on + strand, within Dshi_2911 at 3071.573 kb on + strand at 3071.723 kb on + strand, within Dshi_2912 at 3071.784 kb on + strand at 3071.840 kb on - strand at 3071.843 kb on + strand at 3071.847 kb on - strand at 3071.851 kb on - strand at 3071.851 kb on - strand at 3071.851 kb on - strand at 3071.929 kb on + strand at 3071.934 kb on + strand at 3072.035 kb on + strand, within Dshi_2913 at 3072.149 kb on - strand, within Dshi_2913 at 3072.426 kb on - strand, within Dshi_2913 at 3072.429 kb on - strand, within Dshi_2913 at 3072.568 kb on - strand, within Dshi_2913
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 3,070,108 - -1.3 3,070,119 - -0.6 3,070,140 - +0.5 3,070,189 - -1.5 3,070,212 + +1.9 3,070,265 + Dshi_2910 0.15 -0.6 3,070,267 - Dshi_2910 0.16 -0.2 3,070,280 - Dshi_2910 0.18 -0.1 3,070,302 + Dshi_2910 0.21 -3.7 3,070,310 - Dshi_2910 0.22 -0.1 3,070,324 - Dshi_2910 0.24 -0.4 3,070,328 - Dshi_2910 0.25 +3.2 3,070,508 + Dshi_2910 0.52 +0.2 3,070,528 - Dshi_2910 0.55 -1.7 3,070,686 + Dshi_2910 0.79 +0.6 3,070,880 + +2.2 3,070,957 + +0.2 3,070,960 - Dshi_2911 0.10 +0.1 3,070,975 - Dshi_2911 0.13 -1.2 3,071,015 - Dshi_2911 0.18 -0.4 3,071,079 - Dshi_2911 0.28 -0.1 3,071,087 - Dshi_2911 0.29 +1.2 3,071,155 + Dshi_2911 0.39 +0.6 3,071,179 + Dshi_2911 0.42 -0.7 3,071,366 + Dshi_2911 0.69 +0.6 3,071,408 + Dshi_2911 0.76 -0.7 3,071,573 + +0.6 3,071,723 + Dshi_2912 0.65 +2.2 3,071,784 + -1.4 3,071,840 - +0.6 3,071,843 + -1.4 3,071,847 - +1.1 3,071,851 - +2.6 3,071,851 - +2.2 3,071,851 - -1.5 3,071,929 + -0.1 3,071,934 + +1.6 3,072,035 + Dshi_2913 0.12 -0.2 3,072,149 - Dshi_2913 0.23 +3.2 3,072,426 - Dshi_2913 0.52 +1.1 3,072,429 - Dshi_2913 0.52 -0.1 3,072,568 - Dshi_2913 0.67 -1.2
Or see this region's nucleotide sequence