Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2695

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2694 and Dshi_R0047 are separated by 47 nucleotidesDshi_R0047 and Dshi_2695 are separated by 446 nucleotidesDshi_2695 and Dshi_2696 are separated by 61 nucleotides Dshi_2694: Dshi_2694 - cytochrome c family protein, putative (RefSeq), at 2,853,623 to 2,854,024 _2694 Dshi_R0047: Dshi_R0047 - tRNA-Met (RefSeq), at 2,854,072 to 2,854,148 _R0047 Dshi_2695: Dshi_2695 - putative ureashort-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor (RefSeq), at 2,854,595 to 2,855,953 _2695 Dshi_2696: Dshi_2696 - inner-membrane translocator (RefSeq), at 2,856,015 to 2,857,679 _2696 Position (kb) 2854 2855 2856Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2853.595 kb on - strandat 2853.615 kb on + strandat 2853.646 kb on + strandat 2853.793 kb on + strand, within Dshi_2694at 2853.960 kb on + strand, within Dshi_2694at 2854.013 kb on + strandat 2854.013 kb on + strandat 2854.021 kb on - strandat 2854.247 kb on - strandat 2854.402 kb on - strandat 2854.874 kb on + strand, within Dshi_2695at 2855.038 kb on + strand, within Dshi_2695at 2855.038 kb on + strand, within Dshi_2695at 2855.046 kb on - strand, within Dshi_2695at 2855.046 kb on - strand, within Dshi_2695at 2855.046 kb on - strand, within Dshi_2695at 2855.046 kb on - strand, within Dshi_2695at 2855.046 kb on - strand, within Dshi_2695at 2855.046 kb on - strand, within Dshi_2695at 2855.053 kb on + strand, within Dshi_2695at 2855.083 kb on + strand, within Dshi_2695at 2855.091 kb on - strand, within Dshi_2695at 2855.091 kb on - strand, within Dshi_2695at 2855.099 kb on + strand, within Dshi_2695at 2855.220 kb on - strand, within Dshi_2695at 2855.238 kb on - strand, within Dshi_2695at 2855.274 kb on - strand, within Dshi_2695at 2855.312 kb on - strand, within Dshi_2695at 2855.638 kb on + strand, within Dshi_2695at 2855.638 kb on + strand, within Dshi_2695at 2855.646 kb on - strand, within Dshi_2695at 2855.646 kb on - strand, within Dshi_2695at 2855.728 kb on + strand, within Dshi_2695at 2855.800 kb on + strand, within Dshi_2695at 2856.042 kb on + strandat 2856.076 kb on + strandat 2856.138 kb on + strandat 2856.163 kb on - strandat 2856.227 kb on - strand, within Dshi_2696at 2856.241 kb on + strand, within Dshi_2696at 2856.303 kb on + strand, within Dshi_2696at 2856.533 kb on + strand, within Dshi_2696at 2856.638 kb on + strand, within Dshi_2696at 2856.840 kb on + strand, within Dshi_2696at 2856.867 kb on - strand, within Dshi_2696at 2856.902 kb on + strand, within Dshi_2696

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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2,853,595 - -1.7
2,853,615 + -1.5
2,853,646 + +0.6
2,853,793 + Dshi_2694 0.42 -0.4
2,853,960 + Dshi_2694 0.84 -0.4
2,854,013 + -2.2
2,854,013 + +0.9
2,854,021 - -0.1
2,854,247 - -1.4
2,854,402 - +2.2
2,854,874 + Dshi_2695 0.21 -0.0
2,855,038 + Dshi_2695 0.33 +1.6
2,855,038 + Dshi_2695 0.33 -3.9
2,855,046 - Dshi_2695 0.33 +0.2
2,855,046 - Dshi_2695 0.33 +2.2
2,855,046 - Dshi_2695 0.33 -1.4
2,855,046 - Dshi_2695 0.33 +0.1
2,855,046 - Dshi_2695 0.33 -2.8
2,855,046 - Dshi_2695 0.33 -2.2
2,855,053 + Dshi_2695 0.34 -1.8
2,855,083 + Dshi_2695 0.36 +0.2
2,855,091 - Dshi_2695 0.36 -0.2
2,855,091 - Dshi_2695 0.36 -3.1
2,855,099 + Dshi_2695 0.37 -0.9
2,855,220 - Dshi_2695 0.46 -0.1
2,855,238 - Dshi_2695 0.47 -1.0
2,855,274 - Dshi_2695 0.50 -1.6
2,855,312 - Dshi_2695 0.53 -3.4
2,855,638 + Dshi_2695 0.77 +0.6
2,855,638 + Dshi_2695 0.77 -1.3
2,855,646 - Dshi_2695 0.77 -0.7
2,855,646 - Dshi_2695 0.77 -0.7
2,855,728 + Dshi_2695 0.83 +1.1
2,855,800 + Dshi_2695 0.89 +2.9
2,856,042 + +0.6
2,856,076 + +0.2
2,856,138 + -0.4
2,856,163 - +0.6
2,856,227 - Dshi_2696 0.13 -0.5
2,856,241 + Dshi_2696 0.14 +0.6
2,856,303 + Dshi_2696 0.17 +0.6
2,856,533 + Dshi_2696 0.31 -1.7
2,856,638 + Dshi_2696 0.37 +1.6
2,856,840 + Dshi_2696 0.50 +1.2
2,856,867 - Dshi_2696 0.51 -0.1
2,856,902 + Dshi_2696 0.53 +1.2

Or see this region's nucleotide sequence