Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2438

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2437 and Dshi_2438 are separated by 107 nucleotidesDshi_2438 and Dshi_2439 overlap by 4 nucleotides Dshi_2437: Dshi_2437 - L-rhamnose isomerase (EC 5.3.1.14) (from data), at 2,579,647 to 2,580,885 _2437 Dshi_2438: Dshi_2438 - amidohydrolase 2 (RefSeq), at 2,580,993 to 2,581,871 _2438 Dshi_2439: Dshi_2439 - protein of unknown function DUF112 transmembrane (RefSeq), at 2,581,868 to 2,583,352 _2439 Position (kb) 2580 2581 2582Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2580.176 kb on + strand, within Dshi_2437at 2580.184 kb on - strand, within Dshi_2437at 2580.187 kb on + strand, within Dshi_2437at 2580.393 kb on + strand, within Dshi_2437at 2580.452 kb on + strand, within Dshi_2437at 2580.460 kb on - strand, within Dshi_2437at 2580.460 kb on - strand, within Dshi_2437at 2580.724 kb on + strand, within Dshi_2437at 2580.786 kb on + strandat 2580.854 kb on + strandat 2580.854 kb on + strandat 2580.996 kb on - strandat 2581.015 kb on - strandat 2581.063 kb on - strandat 2581.210 kb on - strand, within Dshi_2438at 2581.275 kb on - strand, within Dshi_2438at 2581.277 kb on - strand, within Dshi_2438at 2581.332 kb on + strand, within Dshi_2438at 2581.371 kb on + strand, within Dshi_2438at 2581.696 kb on - strand, within Dshi_2438at 2581.744 kb on + strand, within Dshi_2438at 2581.930 kb on - strandat 2581.947 kb on - strandat 2581.961 kb on - strandat 2582.138 kb on - strand, within Dshi_2439at 2582.166 kb on + strand, within Dshi_2439at 2582.179 kb on - strand, within Dshi_2439at 2582.229 kb on - strand, within Dshi_2439at 2582.239 kb on - strand, within Dshi_2439at 2582.243 kb on + strand, within Dshi_2439at 2582.305 kb on - strand, within Dshi_2439at 2582.335 kb on + strand, within Dshi_2439at 2582.352 kb on - strand, within Dshi_2439at 2582.410 kb on - strand, within Dshi_2439at 2582.429 kb on - strand, within Dshi_2439at 2582.429 kb on - strand, within Dshi_2439at 2582.613 kb on - strand, within Dshi_2439at 2582.624 kb on - strand, within Dshi_2439at 2582.653 kb on + strand, within Dshi_2439at 2582.803 kb on - strand, within Dshi_2439at 2582.806 kb on + strand, within Dshi_2439at 2582.842 kb on + strand, within Dshi_2439

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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2,580,176 + Dshi_2437 0.43 -1.3
2,580,184 - Dshi_2437 0.43 -3.1
2,580,187 + Dshi_2437 0.44 -0.3
2,580,393 + Dshi_2437 0.60 -1.1
2,580,452 + Dshi_2437 0.65 -3.4
2,580,460 - Dshi_2437 0.66 -1.0
2,580,460 - Dshi_2437 0.66 -0.1
2,580,724 + Dshi_2437 0.87 +1.7
2,580,786 + +0.3
2,580,854 + -0.7
2,580,854 + -0.7
2,580,996 - -2.5
2,581,015 - -0.7
2,581,063 - +0.5
2,581,210 - Dshi_2438 0.25 -1.7
2,581,275 - Dshi_2438 0.32 +1.9
2,581,277 - Dshi_2438 0.32 +1.9
2,581,332 + Dshi_2438 0.39 -1.5
2,581,371 + Dshi_2438 0.43 -1.8
2,581,696 - Dshi_2438 0.80 +1.1
2,581,744 + Dshi_2438 0.85 -1.3
2,581,930 - +2.9
2,581,947 - +1.9
2,581,961 - -3.5
2,582,138 - Dshi_2439 0.18 +1.0
2,582,166 + Dshi_2439 0.20 -0.5
2,582,179 - Dshi_2439 0.21 -0.9
2,582,229 - Dshi_2439 0.24 +0.9
2,582,239 - Dshi_2439 0.25 -1.0
2,582,243 + Dshi_2439 0.25 +0.3
2,582,305 - Dshi_2439 0.29 -1.8
2,582,335 + Dshi_2439 0.31 -3.0
2,582,352 - Dshi_2439 0.33 +1.3
2,582,410 - Dshi_2439 0.36 +0.3
2,582,429 - Dshi_2439 0.38 -0.7
2,582,429 - Dshi_2439 0.38 +1.3
2,582,613 - Dshi_2439 0.50 -4.4
2,582,624 - Dshi_2439 0.51 +1.3
2,582,653 + Dshi_2439 0.53 +0.3
2,582,803 - Dshi_2439 0.63 -1.0
2,582,806 + Dshi_2439 0.63 -1.7
2,582,842 + Dshi_2439 0.66 -2.7

Or see this region's nucleotide sequence