Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2437 and Dshi_2438 are separated by 107 nucleotides Dshi_2438 and Dshi_2439 overlap by 4 nucleotides
Dshi_2437: Dshi_2437 - L-rhamnose isomerase (EC 5.3.1.14) (from data) , at 2,579,647 to 2,580,885
_2437
Dshi_2438: Dshi_2438 - amidohydrolase 2 (RefSeq), at 2,580,993 to 2,581,871
_2438
Dshi_2439: Dshi_2439 - protein of unknown function DUF112 transmembrane (RefSeq), at 2,581,868 to 2,583,352
_2439
Position (kb)
2580
2581
2582 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2580.176 kb on + strand, within Dshi_2437 at 2580.184 kb on - strand, within Dshi_2437 at 2580.187 kb on + strand, within Dshi_2437 at 2580.393 kb on + strand, within Dshi_2437 at 2580.452 kb on + strand, within Dshi_2437 at 2580.460 kb on - strand, within Dshi_2437 at 2580.460 kb on - strand, within Dshi_2437 at 2580.724 kb on + strand, within Dshi_2437 at 2580.786 kb on + strand at 2580.854 kb on + strand at 2580.854 kb on + strand at 2580.996 kb on - strand at 2581.015 kb on - strand at 2581.063 kb on - strand at 2581.210 kb on - strand, within Dshi_2438 at 2581.275 kb on - strand, within Dshi_2438 at 2581.277 kb on - strand, within Dshi_2438 at 2581.332 kb on + strand, within Dshi_2438 at 2581.371 kb on + strand, within Dshi_2438 at 2581.696 kb on - strand, within Dshi_2438 at 2581.744 kb on + strand, within Dshi_2438 at 2581.930 kb on - strand at 2581.947 kb on - strand at 2581.961 kb on - strand at 2582.138 kb on - strand, within Dshi_2439 at 2582.166 kb on + strand, within Dshi_2439 at 2582.179 kb on - strand, within Dshi_2439 at 2582.229 kb on - strand, within Dshi_2439 at 2582.239 kb on - strand, within Dshi_2439 at 2582.243 kb on + strand, within Dshi_2439 at 2582.305 kb on - strand, within Dshi_2439 at 2582.335 kb on + strand, within Dshi_2439 at 2582.352 kb on - strand, within Dshi_2439 at 2582.410 kb on - strand, within Dshi_2439 at 2582.429 kb on - strand, within Dshi_2439 at 2582.429 kb on - strand, within Dshi_2439 at 2582.613 kb on - strand, within Dshi_2439 at 2582.624 kb on - strand, within Dshi_2439 at 2582.653 kb on + strand, within Dshi_2439 at 2582.803 kb on - strand, within Dshi_2439 at 2582.806 kb on + strand, within Dshi_2439 at 2582.842 kb on + strand, within Dshi_2439
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 2,580,176 + Dshi_2437 0.43 -1.3 2,580,184 - Dshi_2437 0.43 -3.1 2,580,187 + Dshi_2437 0.44 -0.3 2,580,393 + Dshi_2437 0.60 -1.1 2,580,452 + Dshi_2437 0.65 -3.4 2,580,460 - Dshi_2437 0.66 -1.0 2,580,460 - Dshi_2437 0.66 -0.1 2,580,724 + Dshi_2437 0.87 +1.7 2,580,786 + +0.3 2,580,854 + -0.7 2,580,854 + -0.7 2,580,996 - -2.5 2,581,015 - -0.7 2,581,063 - +0.5 2,581,210 - Dshi_2438 0.25 -1.7 2,581,275 - Dshi_2438 0.32 +1.9 2,581,277 - Dshi_2438 0.32 +1.9 2,581,332 + Dshi_2438 0.39 -1.5 2,581,371 + Dshi_2438 0.43 -1.8 2,581,696 - Dshi_2438 0.80 +1.1 2,581,744 + Dshi_2438 0.85 -1.3 2,581,930 - +2.9 2,581,947 - +1.9 2,581,961 - -3.5 2,582,138 - Dshi_2439 0.18 +1.0 2,582,166 + Dshi_2439 0.20 -0.5 2,582,179 - Dshi_2439 0.21 -0.9 2,582,229 - Dshi_2439 0.24 +0.9 2,582,239 - Dshi_2439 0.25 -1.0 2,582,243 + Dshi_2439 0.25 +0.3 2,582,305 - Dshi_2439 0.29 -1.8 2,582,335 + Dshi_2439 0.31 -3.0 2,582,352 - Dshi_2439 0.33 +1.3 2,582,410 - Dshi_2439 0.36 +0.3 2,582,429 - Dshi_2439 0.38 -0.7 2,582,429 - Dshi_2439 0.38 +1.3 2,582,613 - Dshi_2439 0.50 -4.4 2,582,624 - Dshi_2439 0.51 +1.3 2,582,653 + Dshi_2439 0.53 +0.3 2,582,803 - Dshi_2439 0.63 -1.0 2,582,806 + Dshi_2439 0.63 -1.7 2,582,842 + Dshi_2439 0.66 -2.7
Or see this region's nucleotide sequence