Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2411

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2410 and Dshi_2411 are separated by 172 nucleotidesDshi_2411 and Dshi_2412 are separated by 114 nucleotides Dshi_2410: Dshi_2410 - O-succinylhomoserine sulfhydrylase (RefSeq), at 2,546,843 to 2,548,021 _2410 Dshi_2411: Dshi_2411 - protein of unknown function DUF198 (RefSeq), at 2,548,194 to 2,549,297 _2411 Dshi_2412: Dshi_2412 - Chloride channel core (RefSeq), at 2,549,412 to 2,551,100 _2412 Position (kb) 2548 2549 2550Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2548.112 kb on - strandat 2548.165 kb on + strandat 2548.188 kb on + strandat 2549.300 kb on - strandat 2549.312 kb on + strandat 2549.600 kb on + strand, within Dshi_2412at 2549.906 kb on + strand, within Dshi_2412at 2549.982 kb on + strand, within Dshi_2412at 2550.039 kb on - strand, within Dshi_2412at 2550.078 kb on - strand, within Dshi_2412at 2550.209 kb on + strand, within Dshi_2412at 2550.209 kb on + strand, within Dshi_2412

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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2,548,112 - -2.5
2,548,165 + -1.0
2,548,188 + -1.7
2,549,300 - -0.8
2,549,312 + +2.8
2,549,600 + Dshi_2412 0.11 +0.3
2,549,906 + Dshi_2412 0.29 -1.3
2,549,982 + Dshi_2412 0.34 -0.4
2,550,039 - Dshi_2412 0.37 -1.1
2,550,078 - Dshi_2412 0.39 -0.7
2,550,209 + Dshi_2412 0.47 +1.9
2,550,209 + Dshi_2412 0.47 +2.3

Or see this region's nucleotide sequence