Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2383

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2381 and Dshi_2382 are separated by 36 nucleotidesDshi_2382 and Dshi_2383 are separated by 411 nucleotidesDshi_2383 and Dshi_2384 are separated by 9 nucleotidesDshi_2384 and Dshi_2385 are separated by 407 nucleotides Dshi_2381: Dshi_2381 - lipoate-protein ligase B (RefSeq), at 2,515,483 to 2,516,145 _2381 Dshi_2382: Dshi_2382 - hypothetical protein (RefSeq), at 2,516,182 to 2,516,721 _2382 Dshi_2383: Dshi_2383 - Cytochrome c oxidase subunit I type (RefSeq), at 2,517,133 to 2,518,809 _2383 Dshi_2384: Dshi_2384 - integral membrane protein-like protein (RefSeq), at 2,518,819 to 2,519,340 _2384 Dshi_2385: Dshi_2385 - transcriptional regulator, TraR/DksA family (RefSeq), at 2,519,748 to 2,520,101 _2385 Position (kb) 2517 2518 2519Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2516.140 kb on + strandat 2516.200 kb on - strandat 2516.219 kb on - strandat 2516.243 kb on - strand, within Dshi_2382at 2516.249 kb on + strand, within Dshi_2382at 2516.257 kb on - strand, within Dshi_2382at 2516.285 kb on - strand, within Dshi_2382at 2516.668 kb on - strandat 2516.760 kb on + strandat 2516.835 kb on + strandat 2516.958 kb on - strandat 2517.137 kb on - strandat 2517.280 kb on + strandat 2517.395 kb on - strand, within Dshi_2383at 2517.678 kb on - strand, within Dshi_2383at 2518.118 kb on - strand, within Dshi_2383at 2519.245 kb on - strand, within Dshi_2384at 2519.250 kb on + strand, within Dshi_2384at 2519.511 kb on + strandat 2519.519 kb on - strandat 2519.519 kb on - strandat 2519.583 kb on - strandat 2519.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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2,516,140 + -0.8
2,516,200 - -0.5
2,516,219 - +0.6
2,516,243 - Dshi_2382 0.11 -1.0
2,516,249 + Dshi_2382 0.12 +0.5
2,516,257 - Dshi_2382 0.14 -0.8
2,516,285 - Dshi_2382 0.19 -0.3
2,516,668 - +0.3
2,516,760 + -1.2
2,516,835 + -1.8
2,516,958 - -1.5
2,517,137 - -2.0
2,517,280 + -2.6
2,517,395 - Dshi_2383 0.16 -0.7
2,517,678 - Dshi_2383 0.32 -3.5
2,518,118 - Dshi_2383 0.59 -0.8
2,519,245 - Dshi_2384 0.82 -2.3
2,519,250 + Dshi_2384 0.83 -1.4
2,519,511 + +0.3
2,519,519 - +1.9
2,519,519 - -1.7
2,519,583 - -2.7
2,519,583 - -3.5

Or see this region's nucleotide sequence