Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2381 and Dshi_2382 are separated by 36 nucleotides Dshi_2382 and Dshi_2383 are separated by 411 nucleotides Dshi_2383 and Dshi_2384 are separated by 9 nucleotides Dshi_2384 and Dshi_2385 are separated by 407 nucleotides
Dshi_2381: Dshi_2381 - lipoate-protein ligase B (RefSeq), at 2,515,483 to 2,516,145
_2381
Dshi_2382: Dshi_2382 - hypothetical protein (RefSeq), at 2,516,182 to 2,516,721
_2382
Dshi_2383: Dshi_2383 - Cytochrome c oxidase subunit I type (RefSeq), at 2,517,133 to 2,518,809
_2383
Dshi_2384: Dshi_2384 - integral membrane protein-like protein (RefSeq), at 2,518,819 to 2,519,340
_2384
Dshi_2385: Dshi_2385 - transcriptional regulator, TraR/DksA family (RefSeq), at 2,519,748 to 2,520,101
_2385
Position (kb)
2517
2518
2519 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2516.140 kb on + strand at 2516.200 kb on - strand at 2516.219 kb on - strand at 2516.243 kb on - strand, within Dshi_2382 at 2516.249 kb on + strand, within Dshi_2382 at 2516.257 kb on - strand, within Dshi_2382 at 2516.285 kb on - strand, within Dshi_2382 at 2516.668 kb on - strand at 2516.760 kb on + strand at 2516.835 kb on + strand at 2516.958 kb on - strand at 2517.137 kb on - strand at 2517.280 kb on + strand at 2517.395 kb on - strand, within Dshi_2383 at 2517.678 kb on - strand, within Dshi_2383 at 2518.118 kb on - strand, within Dshi_2383 at 2519.245 kb on - strand, within Dshi_2384 at 2519.250 kb on + strand, within Dshi_2384 at 2519.511 kb on + strand at 2519.519 kb on - strand at 2519.519 kb on - strand at 2519.583 kb on - strand at 2519.583 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 2,516,140 + -0.8 2,516,200 - -0.5 2,516,219 - +0.6 2,516,243 - Dshi_2382 0.11 -1.0 2,516,249 + Dshi_2382 0.12 +0.5 2,516,257 - Dshi_2382 0.14 -0.8 2,516,285 - Dshi_2382 0.19 -0.3 2,516,668 - +0.3 2,516,760 + -1.2 2,516,835 + -1.8 2,516,958 - -1.5 2,517,137 - -2.0 2,517,280 + -2.6 2,517,395 - Dshi_2383 0.16 -0.7 2,517,678 - Dshi_2383 0.32 -3.5 2,518,118 - Dshi_2383 0.59 -0.8 2,519,245 - Dshi_2384 0.82 -2.3 2,519,250 + Dshi_2384 0.83 -1.4 2,519,511 + +0.3 2,519,519 - +1.9 2,519,519 - -1.7 2,519,583 - -2.7 2,519,583 - -3.5
Or see this region's nucleotide sequence