Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2355
Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. benzoic 0.32 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,487,881 | - | Dshi_2354 | 0.18 | -0.9 | |
2,487,922 | - | Dshi_2354 | 0.22 | -0.0 | |
2,488,040 | + | Dshi_2354 | 0.32 | +0.3 | |
2,488,189 | - | Dshi_2354 | 0.45 | -1.3 | |
2,488,496 | + | Dshi_2354 | 0.72 | +1.9 | |
2,488,562 | + | Dshi_2354 | 0.77 | -2.9 | |
2,488,631 | - | Dshi_2354 | 0.83 | -1.7 | |
2,488,638 | + | Dshi_2354 | 0.84 | +0.6 | |
2,488,638 | + | Dshi_2354 | 0.84 | -3.6 | |
2,488,684 | - | Dshi_2354 | 0.88 | -2.3 | |
2,488,709 | + | +3.1 | |||
2,488,756 | + | -0.7 | |||
2,488,801 | + | -0.7 | |||
2,488,824 | - | +0.3 | |||
2,489,210 | - | Dshi_2355 | 0.30 | +1.9 | |
2,489,269 | + | Dshi_2355 | 0.35 | -2.0 | |
2,489,287 | + | Dshi_2355 | 0.36 | +0.9 | |
2,489,314 | - | Dshi_2355 | 0.38 | -0.4 | |
2,489,318 | - | Dshi_2355 | 0.38 | +0.3 | |
2,489,323 | + | Dshi_2355 | 0.39 | +1.1 | |
2,489,532 | - | Dshi_2355 | 0.55 | -1.0 | |
2,489,602 | + | Dshi_2355 | 0.61 | +1.1 | |
2,489,767 | + | Dshi_2355 | 0.74 | +0.3 | |
2,489,856 | - | Dshi_2355 | 0.81 | +1.1 | |
2,490,003 | - | -1.8 | |||
2,490,139 | + | -0.3 | |||
2,490,525 | - | Dshi_2356 | 0.36 | -0.2 | |
2,490,810 | - | Dshi_2356 | 0.67 | +0.3 | |
2,490,859 | - | Dshi_2356 | 0.73 | -2.1 | |
2,490,910 | + | Dshi_2356 | 0.78 | -0.8 |
Or see this region's nucleotide sequence