Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2179

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2178 and Dshi_2179 are separated by 452 nucleotidesDshi_2179 and Dshi_2180 overlap by 1 nucleotides Dshi_2178: Dshi_2178 - protein of unknown function DUF264 (RefSeq), at 2,304,797 to 2,306,155 _2178 Dshi_2179: Dshi_2179 - aminodeoxychorismate lyase (RefSeq), at 2,306,608 to 2,307,762 _2179 Dshi_2180: Dshi_2180 - Beta-ketoacyl synthase (RefSeq), at 2,307,762 to 2,309,024 _2180 Position (kb) 2306 2307 2308Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2305.663 kb on + strand, within Dshi_2178at 2305.681 kb on - strand, within Dshi_2178at 2305.710 kb on - strand, within Dshi_2178at 2305.784 kb on + strand, within Dshi_2178at 2305.849 kb on + strand, within Dshi_2178at 2305.911 kb on - strand, within Dshi_2178at 2305.919 kb on - strand, within Dshi_2178at 2306.025 kb on + strandat 2306.049 kb on - strandat 2306.115 kb on - strandat 2306.156 kb on + strandat 2306.156 kb on + strandat 2306.164 kb on - strandat 2306.164 kb on - strandat 2306.164 kb on - strandat 2306.164 kb on - strandat 2306.165 kb on - strandat 2306.175 kb on - strandat 2306.289 kb on - strandat 2306.332 kb on + strandat 2306.413 kb on + strandat 2306.421 kb on + strandat 2306.483 kb on + strandat 2306.491 kb on - strandat 2307.752 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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2,305,663 + Dshi_2178 0.64 -1.3
2,305,681 - Dshi_2178 0.65 -0.9
2,305,710 - Dshi_2178 0.67 -0.2
2,305,784 + Dshi_2178 0.73 +0.5
2,305,849 + Dshi_2178 0.77 -0.2
2,305,911 - Dshi_2178 0.82 -2.1
2,305,919 - Dshi_2178 0.83 -0.8
2,306,025 + -0.7
2,306,049 - -3.0
2,306,115 - +1.5
2,306,156 + -0.7
2,306,156 + +2.8
2,306,164 - -1.1
2,306,164 - +0.3
2,306,164 - -0.7
2,306,164 - +2.3
2,306,165 - +0.8
2,306,175 - +1.3
2,306,289 - -1.6
2,306,332 + -0.5
2,306,413 + -2.9
2,306,421 + -0.8
2,306,483 + -0.0
2,306,491 - +0.7
2,307,752 + -0.9

Or see this region's nucleotide sequence