Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1996 and Dshi_1997 overlap by 4 nucleotides Dshi_1997 and Dshi_1998 overlap by 1 nucleotides Dshi_1998 and Dshi_1999 overlap by 4 nucleotides
Dshi_1996: Dshi_1996 - xylose isomerase (RefSeq), at 2,114,512 to 2,115,816
_1996
Dshi_1997: Dshi_1997 - Xylulose kinase (EC 2.7.1.17) (from data) , at 2,115,813 to 2,117,255
_1997
Dshi_1998: Dshi_1998 - ABC transporter related (RefSeq), at 2,117,255 to 2,118,001
_1998
Dshi_1999: Dshi_1999 - inner-membrane translocator (RefSeq), at 2,117,998 to 2,119,305
_1999
Position (kb)
2115
2116
2117
2118 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2115.021 kb on - strand, within Dshi_1996 at 2115.073 kb on + strand, within Dshi_1996 at 2115.095 kb on + strand, within Dshi_1996 at 2115.181 kb on + strand, within Dshi_1996 at 2115.199 kb on - strand, within Dshi_1996 at 2115.209 kb on - strand, within Dshi_1996 at 2115.254 kb on - strand, within Dshi_1996 at 2115.265 kb on - strand, within Dshi_1996 at 2115.300 kb on - strand, within Dshi_1996 at 2115.469 kb on - strand, within Dshi_1996 at 2115.527 kb on + strand, within Dshi_1996 at 2115.575 kb on + strand, within Dshi_1996 at 2115.599 kb on - strand, within Dshi_1996 at 2115.713 kb on + strand at 2115.765 kb on + strand at 2115.773 kb on - strand at 2115.967 kb on - strand, within Dshi_1997 at 2115.969 kb on + strand, within Dshi_1997 at 2116.135 kb on - strand, within Dshi_1997 at 2116.247 kb on - strand, within Dshi_1997 at 2116.247 kb on - strand, within Dshi_1997 at 2116.354 kb on + strand, within Dshi_1997 at 2116.423 kb on - strand, within Dshi_1997 at 2116.645 kb on - strand, within Dshi_1997 at 2116.705 kb on + strand, within Dshi_1997 at 2116.713 kb on - strand, within Dshi_1997 at 2116.841 kb on + strand, within Dshi_1997 at 2117.210 kb on + strand at 2117.230 kb on - strand at 2117.247 kb on + strand at 2117.265 kb on + strand at 2117.342 kb on - strand, within Dshi_1998 at 2117.441 kb on - strand, within Dshi_1998 at 2117.516 kb on - strand, within Dshi_1998 at 2117.525 kb on + strand, within Dshi_1998 at 2117.577 kb on + strand, within Dshi_1998 at 2117.677 kb on - strand, within Dshi_1998 at 2117.768 kb on - strand, within Dshi_1998 at 2117.778 kb on + strand, within Dshi_1998 at 2117.929 kb on + strand at 2117.974 kb on - strand at 2118.060 kb on - strand at 2118.060 kb on - strand at 2118.111 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 2,115,021 - Dshi_1996 0.39 -0.9 2,115,073 + Dshi_1996 0.43 -1.3 2,115,095 + Dshi_1996 0.45 +2.6 2,115,181 + Dshi_1996 0.51 -2.0 2,115,199 - Dshi_1996 0.53 +0.3 2,115,209 - Dshi_1996 0.53 +1.3 2,115,254 - Dshi_1996 0.57 +2.3 2,115,265 - Dshi_1996 0.58 -2.5 2,115,300 - Dshi_1996 0.60 +1.3 2,115,469 - Dshi_1996 0.73 -0.8 2,115,527 + Dshi_1996 0.78 +0.3 2,115,575 + Dshi_1996 0.81 -1.3 2,115,599 - Dshi_1996 0.83 -1.9 2,115,713 + +0.3 2,115,765 + -1.9 2,115,773 - -0.1 2,115,967 - Dshi_1997 0.11 -1.9 2,115,969 + Dshi_1997 0.11 +1.3 2,116,135 - Dshi_1997 0.22 +1.9 2,116,247 - Dshi_1997 0.30 +1.3 2,116,247 - Dshi_1997 0.30 +1.9 2,116,354 + Dshi_1997 0.37 -0.1 2,116,423 - Dshi_1997 0.42 -2.7 2,116,645 - Dshi_1997 0.58 -0.9 2,116,705 + Dshi_1997 0.62 -1.0 2,116,713 - Dshi_1997 0.62 -0.7 2,116,841 + Dshi_1997 0.71 -0.9 2,117,210 + +0.3 2,117,230 - -1.3 2,117,247 + -0.4 2,117,265 + -0.3 2,117,342 - Dshi_1998 0.12 +1.3 2,117,441 - Dshi_1998 0.25 +0.3 2,117,516 - Dshi_1998 0.35 -0.7 2,117,525 + Dshi_1998 0.36 +3.9 2,117,577 + Dshi_1998 0.43 -0.8 2,117,677 - Dshi_1998 0.56 +2.6 2,117,768 - Dshi_1998 0.69 +0.3 2,117,778 + Dshi_1998 0.70 +0.3 2,117,929 + +1.9 2,117,974 - +1.9 2,118,060 - -0.9 2,118,060 - +1.3 2,118,111 + -1.2
Or see this region's nucleotide sequence