Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1924 and Dshi_1925 are separated by 29 nucleotides Dshi_1925 and Dshi_1926 are separated by 87 nucleotides
Dshi_1924: Dshi_1924 - TRAP transporter solute receptor, TAXI family (RefSeq), at 2,009,151 to 2,010,203
_1924
Dshi_1925: Dshi_1925 - AAA ATPase (RefSeq), at 2,010,233 to 2,012,482
_1925
Dshi_1926: Dshi_1926 - primosomal protein N' (RefSeq), at 2,012,570 to 2,014,753
_1926
Position (kb)
2010
2011
2012
2013 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2009.275 kb on + strand, within Dshi_1924 at 2009.337 kb on - strand, within Dshi_1924 at 2009.409 kb on + strand, within Dshi_1924 at 2009.551 kb on - strand, within Dshi_1924 at 2009.579 kb on - strand, within Dshi_1924 at 2009.676 kb on - strand, within Dshi_1924 at 2009.681 kb on - strand, within Dshi_1924 at 2009.725 kb on - strand, within Dshi_1924 at 2009.731 kb on - strand, within Dshi_1924 at 2009.861 kb on + strand, within Dshi_1924 at 2009.893 kb on - strand, within Dshi_1924 at 2009.897 kb on + strand, within Dshi_1924 at 2009.939 kb on - strand, within Dshi_1924 at 2010.058 kb on + strand, within Dshi_1924 at 2010.066 kb on + strand, within Dshi_1924 at 2010.107 kb on + strand at 2010.118 kb on + strand at 2010.132 kb on + strand at 2010.513 kb on + strand, within Dshi_1925 at 2010.876 kb on + strand, within Dshi_1925 at 2010.876 kb on + strand, within Dshi_1925 at 2010.945 kb on + strand, within Dshi_1925 at 2010.945 kb on + strand, within Dshi_1925 at 2011.190 kb on + strand, within Dshi_1925 at 2011.239 kb on + strand, within Dshi_1925 at 2011.249 kb on + strand, within Dshi_1925 at 2011.257 kb on - strand, within Dshi_1925 at 2011.267 kb on - strand, within Dshi_1925 at 2011.372 kb on - strand, within Dshi_1925 at 2011.373 kb on - strand, within Dshi_1925 at 2011.437 kb on + strand, within Dshi_1925 at 2011.806 kb on - strand, within Dshi_1925 at 2011.848 kb on - strand, within Dshi_1925 at 2011.888 kb on - strand, within Dshi_1925 at 2011.995 kb on + strand, within Dshi_1925 at 2012.086 kb on - strand, within Dshi_1925 at 2012.232 kb on + strand, within Dshi_1925 at 2012.321 kb on - strand at 2012.321 kb on - strand at 2012.380 kb on - strand at 2012.470 kb on - strand at 2012.509 kb on - strand at 2012.548 kb on - strand at 2012.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 2,009,275 + Dshi_1924 0.12 -2.8 2,009,337 - Dshi_1924 0.18 -1.7 2,009,409 + Dshi_1924 0.25 +1.9 2,009,551 - Dshi_1924 0.38 -1.6 2,009,579 - Dshi_1924 0.41 -2.3 2,009,676 - Dshi_1924 0.50 -0.4 2,009,681 - Dshi_1924 0.50 +0.7 2,009,725 - Dshi_1924 0.55 -0.5 2,009,731 - Dshi_1924 0.55 +0.3 2,009,861 + Dshi_1924 0.67 +2.6 2,009,893 - Dshi_1924 0.70 -0.1 2,009,897 + Dshi_1924 0.71 +1.6 2,009,939 - Dshi_1924 0.75 +0.9 2,010,058 + Dshi_1924 0.86 +0.3 2,010,066 + Dshi_1924 0.87 -1.7 2,010,107 + -1.5 2,010,118 + -0.4 2,010,132 + -1.3 2,010,513 + Dshi_1925 0.12 -2.3 2,010,876 + Dshi_1925 0.29 +1.9 2,010,876 + Dshi_1925 0.29 +0.3 2,010,945 + Dshi_1925 0.32 +0.3 2,010,945 + Dshi_1925 0.32 +1.3 2,011,190 + Dshi_1925 0.43 +0.3 2,011,239 + Dshi_1925 0.45 -0.9 2,011,249 + Dshi_1925 0.45 -2.3 2,011,257 - Dshi_1925 0.46 -0.7 2,011,267 - Dshi_1925 0.46 +0.8 2,011,372 - Dshi_1925 0.51 -0.4 2,011,373 - Dshi_1925 0.51 -0.5 2,011,437 + Dshi_1925 0.54 -2.3 2,011,806 - Dshi_1925 0.70 +0.3 2,011,848 - Dshi_1925 0.72 -2.7 2,011,888 - Dshi_1925 0.74 +0.3 2,011,995 + Dshi_1925 0.78 -0.3 2,012,086 - Dshi_1925 0.82 -0.1 2,012,232 + Dshi_1925 0.89 -1.2 2,012,321 - -2.6 2,012,321 - -1.4 2,012,380 - -0.1 2,012,470 - +0.3 2,012,509 - -0.7 2,012,548 - +1.0 2,012,550 - +0.3
Or see this region's nucleotide sequence