Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1908

Experiment: m.b. benzoic 0.32 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. benzoic 0.32 mg/ml
1,991,676	-		Dshi_1907	0.49	+1.5
1,991,676	-		Dshi_1907	0.49	-0.0
1,991,682	+		Dshi_1907	0.50	-0.7
1,991,685	+		Dshi_1907	0.50	-0.1
1,991,698	+		Dshi_1907	0.51	-0.8
1,991,704	+		Dshi_1907	0.51	+0.1
1,991,706	-		Dshi_1907	0.51	-0.4
1,991,717	+		Dshi_1907	0.52	-0.5
1,991,762	-		Dshi_1907	0.55	-2.2
1,991,784	+		Dshi_1907	0.57	-0.4
1,991,784	+		Dshi_1907	0.57	-0.1
1,991,792	-		Dshi_1907	0.57	-0.4
1,991,792	-		Dshi_1907	0.57	+0.5
1,991,792	-		Dshi_1907	0.57	-0.6
1,991,802	+		Dshi_1907	0.58	+0.5
1,991,802	+		Dshi_1907	0.58	-0.9
1,991,802	+		Dshi_1907	0.58	-0.6
1,991,810	-		Dshi_1907	0.59	+0.2
1,991,810	-		Dshi_1907	0.59	+0.4
1,991,810	-		Dshi_1907	0.59	+0.3
1,991,810	-		Dshi_1907	0.59	-2.0
1,991,810	-		Dshi_1907	0.59	-1.0
1,991,810	-		Dshi_1907	0.59	-2.1
1,991,812	-		Dshi_1907	0.59	-2.1
1,991,816	+		Dshi_1907	0.59	-0.3
1,991,821	+		Dshi_1907	0.59	+1.0
1,991,821	+		Dshi_1907	0.59	-0.2
1,991,826	+		Dshi_1907	0.60	-0.8
1,991,836	+		Dshi_1907	0.60	-0.2
1,991,844	-		Dshi_1907	0.61	-1.0
1,991,844	-		Dshi_1907	0.61	-1.0
1,991,853	+		Dshi_1907	0.61	-0.8
1,991,858	+		Dshi_1907	0.62	-0.8
1,991,858	+		Dshi_1907	0.62	-0.5
1,991,861	-		Dshi_1907	0.62	-0.4
1,991,866	+		Dshi_1907	0.62	-1.6
1,991,866	-		Dshi_1907	0.62	+0.0
1,991,866	-		Dshi_1907	0.62	-0.7
1,991,866	-		Dshi_1907	0.62	-0.6
1,991,871	+		Dshi_1907	0.63	-0.3
1,991,874	+		Dshi_1907	0.63	-0.2
1,991,874	-		Dshi_1907	0.63	+0.6
1,991,874	-		Dshi_1907	0.63	+0.4
1,991,876	+		Dshi_1907	0.63	+0.6
1,991,879	-		Dshi_1907	0.63	-1.2
1,991,879	-		Dshi_1907	0.63	+1.9
1,991,880	-		Dshi_1907	0.63	+0.2
1,991,892	-		Dshi_1907	0.64	-2.3
1,991,901	+		Dshi_1907	0.65	-2.0
1,991,903	+		Dshi_1907	0.65	+0.3
1,991,903	+		Dshi_1907	0.65	+1.9
1,991,909	-		Dshi_1907	0.65	+0.6
1,991,909	-		Dshi_1907	0.65	-0.1
1,991,909	-		Dshi_1907	0.65	+3.2
1,991,911	+		Dshi_1907	0.65	-1.5
1,991,933	+		Dshi_1907	0.67	-1.3
1,991,943	+		Dshi_1907	0.68	-0.2
1,991,951	-		Dshi_1907	0.68	+1.0
1,991,951	-		Dshi_1907	0.68	+1.6
1,991,969	+		Dshi_1907	0.69	-0.5
1,991,969	-		Dshi_1907	0.69	-1.3
1,991,991	-		Dshi_1907	0.71	+0.9
1,991,991	-		Dshi_1907	0.71	+0.3
1,992,001	-		Dshi_1907	0.72	+2.3
1,992,008	+		Dshi_1907	0.72	-2.4
1,992,011	+		Dshi_1907	0.72	+1.3
1,992,016	+		Dshi_1907	0.73	+0.1
1,992,018	+		Dshi_1907	0.73	+0.6
1,992,018	+		Dshi_1907	0.73	-1.3
1,992,018	+		Dshi_1907	0.73	+0.0
1,992,018	+		Dshi_1907	0.73	+3.1
1,992,018	+		Dshi_1907	0.73	-0.4
1,992,018	+		Dshi_1907	0.73	-0.9
1,992,018	+		Dshi_1907	0.73	+0.7
1,992,026	-		Dshi_1907	0.73	-0.1
1,992,026	-		Dshi_1907	0.73	+1.4
1,992,028	+		Dshi_1907	0.73	-0.8
1,992,028	+		Dshi_1907	0.73	+0.1
1,992,028	+		Dshi_1907	0.73	+0.8
1,992,028	+		Dshi_1907	0.73	-1.4
1,992,028	+		Dshi_1907	0.73	-0.0
1,992,028	+		Dshi_1907	0.73	-0.4
1,992,028	+		Dshi_1907	0.73	+0.6
1,992,028	+		Dshi_1907	0.73	-0.6
1,992,028	+		Dshi_1907	0.73	+1.5
1,992,028	+		Dshi_1907	0.73	-1.8
1,992,028	+		Dshi_1907	0.73	+1.1
1,992,028	+		Dshi_1907	0.73	-1.1
1,992,029	+		Dshi_1907	0.74	+1.9
1,992,031	-		Dshi_1907	0.74	+0.0
1,992,036	-		Dshi_1907	0.74	-1.3
1,992,036	-		Dshi_1907	0.74	+2.1
1,992,036	-		Dshi_1907	0.74	-0.3
1,992,036	-		Dshi_1907	0.74	-0.3
1,992,036	-		Dshi_1907	0.74	+0.1
1,992,037	-		Dshi_1907	0.74	-1.5
1,992,048	+		Dshi_1907	0.75	-0.3
1,992,056	-		Dshi_1907	0.75	+1.5
1,992,061	+		Dshi_1907	0.76	-1.8
1,992,061	+		Dshi_1907	0.76	+0.4
1,992,061	+		Dshi_1907	0.76	+0.1
1,992,069	-		Dshi_1907	0.76	-0.1
1,992,076	+		Dshi_1907	0.77	+0.3
1,992,076	+		Dshi_1907	0.77	+1.0
1,992,079	+		Dshi_1907	0.77	-0.6
1,992,084	-		Dshi_1907	0.77	-1.0
1,992,084	-		Dshi_1907	0.77	-0.6
1,992,084	-		Dshi_1907	0.77	-0.3
1,992,085	+		Dshi_1907	0.77	+1.6
1,992,086	+		Dshi_1907	0.77	-0.3
1,992,086	-		Dshi_1907	0.77	+1.6
1,992,087	-		Dshi_1907	0.78	-0.1
1,992,093	+		Dshi_1907	0.78	-0.1
1,992,096	-		Dshi_1907	0.78	-0.1
1,992,100	+		Dshi_1907	0.78	+0.2
1,992,100	+		Dshi_1907	0.78	-1.5
1,992,100	+		Dshi_1907	0.78	+1.9
1,992,100	+		Dshi_1907	0.78	+3.4
1,992,101	-		Dshi_1907	0.78	+4.6
1,992,106	+		Dshi_1907	0.79	+0.3
1,992,106	+		Dshi_1907	0.79	-0.8
1,992,106	+		Dshi_1907	0.79	-2.1
1,992,106	+		Dshi_1907	0.79	-0.8
1,992,108	-		Dshi_1907	0.79	-1.4
1,992,114	-		Dshi_1907	0.79	+0.7
1,992,114	-		Dshi_1907	0.79	-1.3
1,992,114	-		Dshi_1907	0.79	-0.1
1,992,114	-		Dshi_1907	0.79	+0.9
1,992,114	-		Dshi_1907	0.79	+0.5
1,992,122	+		Dshi_1907	0.80	-0.6
1,992,122	+		Dshi_1907	0.80	+0.2
1,992,122	+		Dshi_1907	0.80	+0.8
1,992,127	+		Dshi_1907	0.80	+1.6
1,992,130	+		Dshi_1907	0.80	-0.8
1,992,130	-		Dshi_1907	0.80	-0.1
1,992,130	-		Dshi_1907	0.80	+1.9
1,992,132	+		Dshi_1907	0.81	+3.3
1,992,141	+		Dshi_1907	0.81	+0.4
1,992,141	+		Dshi_1907	0.81	-0.4
1,992,144	+		Dshi_1907	0.81	+1.4
1,992,147	-		Dshi_1907	0.82	-1.7
1,992,149	-		Dshi_1907	0.82	+0.5
1,992,149	-		Dshi_1907	0.82	-1.8
1,992,149	-		Dshi_1907	0.82	-0.3
1,992,157	+		Dshi_1907	0.82	-0.0
1,992,162	-		Dshi_1907	0.83	+2.3
1,992,175	+		Dshi_1907	0.84	-1.6
1,992,177	+		Dshi_1907	0.84	-0.0
1,992,177	+		Dshi_1907	0.84	-0.2
1,992,184	-		Dshi_1907	0.84	+0.8
1,992,184	-		Dshi_1907	0.84	+2.6
1,992,185	-		Dshi_1907	0.84	-0.3
1,992,186	+		Dshi_1907	0.84	+0.8
1,992,193	-		Dshi_1907	0.85	-1.0
1,992,204	+		Dshi_1907	0.86	+0.1
1,992,206	+		Dshi_1907	0.86	-0.0
1,992,216	+		Dshi_1907	0.86	+0.1
1,992,216	+		Dshi_1907	0.86	+0.4
1,992,223	+		Dshi_1907	0.87	+0.1
1,992,231	-		Dshi_1907	0.87	+0.1
1,992,231	-		Dshi_1907	0.87	-0.0
1,992,233	+		Dshi_1907	0.88	-1.4
1,992,233	+		Dshi_1907	0.88	+0.4
1,992,233	+		Dshi_1907	0.88	-0.5
1,992,233	+		Dshi_1907	0.88	-3.3
1,992,239	-		Dshi_1907	0.88	+1.1
1,992,241	-		Dshi_1907	0.88	+0.2
1,992,241	-		Dshi_1907	0.88	+0.5
1,992,241	-		Dshi_1907	0.88	-0.2
1,992,245	+		Dshi_1907	0.88	+0.1
1,992,264	+		Dshi_1907	0.90	-0.2
1,992,269	+				-0.8
1,992,269	+				-1.4
1,992,269	+				-0.8
1,992,269	+				-1.1
1,992,269	+				+0.6
1,992,269	+				+1.1
1,992,269	+				+1.2
1,992,269	+				+1.1
1,992,276	+				+1.2
1,992,277	-				+0.1
1,992,277	-				+0.1
1,992,277	-				+0.3
1,992,277	-				-0.5
1,992,277	-				+0.2
1,992,277	-				-1.2
1,992,277	-				-1.2
1,992,277	-				-0.4
1,992,277	-				+1.3
1,992,277	-				-0.6
1,992,277	-				-0.4
1,992,277	-				+0.7
1,992,277	-				-0.1
1,992,278	+				+0.1
1,992,286	-				-1.0
1,992,291	-				-0.6
1,992,293	+				-0.8
1,992,293	+				+0.1
1,992,293	+				+0.5
1,992,293	+				-0.7
1,992,293	+				+2.3
1,992,293	+				-0.0
1,992,293	+				+1.0
1,992,293	+				+0.7
1,992,301	-				-3.0
1,992,301	-				+1.0
1,992,301	-				+2.1
1,992,301	-				+3.1
1,992,301	-				-0.6
1,992,301	-				-0.1
1,992,303	+				-0.8
1,992,303	+				+0.4
1,992,308	+				+1.6
1,992,311	-				-0.4
1,992,316	-				+0.4
1,992,408	+				-0.1
1,992,419	+				-1.5
1,992,422	-				-0.0
1,992,422	-				-1.3
1,992,427	+				-0.5
1,992,427	+				-0.9
1,992,427	+				+0.4
1,992,427	-				-0.5
1,992,429	+				-1.1
1,992,435	-				+0.4
1,992,435	-				+0.4
1,992,435	-				-1.0
1,992,435	-				-0.9
1,992,435	-				-0.2
1,992,435	-				-0.3
1,992,435	-				-0.2
1,992,435	-				+1.9
1,992,435	-				-0.6
1,992,442	+				+1.8
1,992,448	-				+0.5
1,992,450	-				+1.2
1,992,450	-				-0.0
1,992,452	+				+0.8
1,992,457	-				-0.6
1,992,460	-				-0.8
1,992,492	-				-0.9
1,992,540	+				-1.6
1,992,547	-				-0.7
1,992,548	-				+1.2
1,992,591	-				-1.1
1,992,601	-				-0.1
1,992,614	-				+0.8
1,992,614	-				-0.2
1,992,633	-				+1.2
1,992,638	-				+0.4
1,992,638	-				-0.6
1,992,638	-				-2.7
1,992,638	-				+0.1
1,992,642	+				-0.0
1,992,659	-				-2.3
1,992,677	+				+0.3
1,992,685	-				-1.2
1,992,687	+				-2.1
1,992,701	-				+0.1
1,992,701	-				+0.2
1,992,731	+		Dshi_1908	0.10	+0.2
1,992,742	+		Dshi_1908	0.12	-0.9
1,992,742	+		Dshi_1908	0.12	+1.9
1,992,754	+		Dshi_1908	0.14	-1.2
1,992,820	-		Dshi_1908	0.25	+0.1
1,992,845	-		Dshi_1908	0.29	-2.7
1,992,852	+		Dshi_1908	0.30	+3.5
1,992,887	+		Dshi_1908	0.36	+0.6
1,992,887	+		Dshi_1908	0.36	+0.5
1,992,895	-		Dshi_1908	0.37	-0.4
1,992,903	+		Dshi_1908	0.38	+2.2
1,992,910	-		Dshi_1908	0.39	+0.6
1,992,916	+		Dshi_1908	0.40	-0.9
1,992,941	+		Dshi_1908	0.44	+0.9
1,993,008	-		Dshi_1908	0.55	-0.4
1,993,010	+		Dshi_1908	0.56	-1.0
1,993,018	-		Dshi_1908	0.57	-0.1
1,993,025	+		Dshi_1908	0.58	-0.4
1,993,025	+		Dshi_1908	0.58	+0.2
1,993,055	-		Dshi_1908	0.63	-0.7
1,993,057	+		Dshi_1908	0.63	+1.5
1,993,058	+		Dshi_1908	0.63	+0.5
1,993,086	+		Dshi_1908	0.68	+0.1
1,993,213	+		Dshi_1908	0.88	-0.3
1,993,218	+		Dshi_1908	0.89	-1.9
1,993,242	+				-0.0
1,993,251	+				-0.8
1,993,306	+				-0.8
1,993,355	+				+0.6
1,993,360	+				+0.1
1,993,384	+				-0.0
1,993,422	+				-1.2
1,993,447	-				+0.9
1,993,447	-				-0.4
1,993,540	+				-0.5
1,993,547	+				+0.5
1,993,555	-				-0.5
1,993,564	-				+0.3
1,993,583	+				+0.3
1,993,583	+				+1.6
1,993,585	+				-0.8
1,993,591	-				-0.8
1,993,591	-				-0.2
1,993,591	-				+3.6
1,993,632	+				+0.2
1,993,747	+				-0.5
1,993,750	-				-0.3
1,993,750	-				-0.2
1,993,759	+				+0.4
1,993,769	+				+2.1
1,993,801	+				+0.8
1,993,801	+				-0.3
1,993,801	+				+1.5
1,993,824	-				+0.5
1,993,824	-				-0.1
1,993,871	-				+0.2
1,993,871	-				+0.3
1,994,032	+		Dshi_1909	0.11	-0.9
1,994,032	+		Dshi_1909	0.11	+3.1
1,994,032	+		Dshi_1909	0.11	+0.2
1,994,032	+		Dshi_1909	0.11	-1.8
1,994,032	+		Dshi_1909	0.11	+1.3
1,994,040	-		Dshi_1909	0.12	-0.2
1,994,040	-		Dshi_1909	0.12	-1.1
1,994,055	+		Dshi_1909	0.15	+0.2
1,994,055	+		Dshi_1909	0.15	+0.1
1,994,068	-		Dshi_1909	0.17	+3.3
1,994,079	+		Dshi_1909	0.18	-0.5
1,994,081	-		Dshi_1909	0.19	-0.7
1,994,087	-		Dshi_1909	0.20	-0.1
1,994,192	-		Dshi_1909	0.36	+1.9
1,994,197	-		Dshi_1909	0.36	+0.3
1,994,216	+		Dshi_1909	0.39	+0.2
1,994,221	+		Dshi_1909	0.40	+0.3
1,994,221	+		Dshi_1909	0.40	-1.1
1,994,226	+		Dshi_1909	0.41	+0.9
1,994,239	-		Dshi_1909	0.43	+0.1
1,994,243	+		Dshi_1909	0.43	-0.6
1,994,243	+		Dshi_1909	0.43	+0.6
1,994,250	-		Dshi_1909	0.44	-1.5
1,994,251	+		Dshi_1909	0.45	-1.0
1,994,251	+		Dshi_1909	0.45	+0.6
1,994,251	+		Dshi_1909	0.45	-0.4
1,994,251	+		Dshi_1909	0.45	+2.3
1,994,251	-		Dshi_1909	0.45	-0.2
1,994,253	+		Dshi_1909	0.45	-0.9
1,994,253	+		Dshi_1909	0.45	-0.0
1,994,261	-		Dshi_1909	0.46	+3.5
1,994,261	-		Dshi_1909	0.46	+0.5
1,994,264	+		Dshi_1909	0.47	-0.9
1,994,264	+		Dshi_1909	0.47	-0.9
1,994,266	+		Dshi_1909	0.47	+0.0
1,994,271	+		Dshi_1909	0.48	+4.0
1,994,271	+		Dshi_1909	0.48	+1.3
1,994,271	+		Dshi_1909	0.48	-0.6
1,994,272	-		Dshi_1909	0.48	-0.3
1,994,276	+		Dshi_1909	0.48	+0.5
1,994,276	+		Dshi_1909	0.48	+0.3
1,994,276	+		Dshi_1909	0.48	-2.7
1,994,276	+		Dshi_1909	0.48	+1.3
1,994,276	+		Dshi_1909	0.48	-0.6
1,994,276	+		Dshi_1909	0.48	+0.4
1,994,276	+		Dshi_1909	0.48	-0.1
1,994,276	+		Dshi_1909	0.48	-0.7
1,994,276	+		Dshi_1909	0.48	+2.3
1,994,276	+		Dshi_1909	0.48	+0.6
1,994,276	+		Dshi_1909	0.48	-0.4
1,994,276	+		Dshi_1909	0.48	+0.5
1,994,281	+		Dshi_1909	0.49	-3.0
1,994,281	+		Dshi_1909	0.49	+0.5
1,994,281	+		Dshi_1909	0.49	+0.9
1,994,281	+		Dshi_1909	0.49	-0.3
1,994,281	+		Dshi_1909	0.49	+0.2
1,994,281	+		Dshi_1909	0.49	+0.3
1,994,281	+		Dshi_1909	0.49	-0.1
1,994,281	+		Dshi_1909	0.49	+0.0
1,994,281	+		Dshi_1909	0.49	-0.9
1,994,281	+		Dshi_1909	0.49	-0.2
1,994,281	+		Dshi_1909	0.49	+1.9
1,994,281	+		Dshi_1909	0.49	+0.2
1,994,281	+		Dshi_1909	0.49	-1.3
1,994,281	+		Dshi_1909	0.49	+1.6
1,994,281	+		Dshi_1909	0.49	-0.0
1,994,281	+		Dshi_1909	0.49	-0.0
1,994,284	-		Dshi_1909	0.50	+1.8
1,994,284	-		Dshi_1909	0.50	-0.3
1,994,284	-		Dshi_1909	0.50	-0.3
1,994,284	-		Dshi_1909	0.50	+0.1
1,994,284	-		Dshi_1909	0.50	+0.4
1,994,284	-		Dshi_1909	0.50	+1.3
1,994,284	-		Dshi_1909	0.50	-0.4
1,994,284	-		Dshi_1909	0.50	-0.6
1,994,284	-		Dshi_1909	0.50	-1.3
1,994,284	-		Dshi_1909	0.50	-0.2
1,994,284	-		Dshi_1909	0.50	-0.4
1,994,284	-		Dshi_1909	0.50	-0.0
1,994,284	-		Dshi_1909	0.50	-0.1
1,994,284	-		Dshi_1909	0.50	-0.3
1,994,284	-		Dshi_1909	0.50	-0.4
1,994,284	-		Dshi_1909	0.50	+0.1
1,994,284	-		Dshi_1909	0.50	-0.9
1,994,284	-		Dshi_1909	0.50	+0.4