Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1854 and Dshi_1855 overlap by 4 nucleotides Dshi_1855 and Dshi_1856 are separated by 44 nucleotides Dshi_1856 and Dshi_1857 are separated by 10 nucleotides Dshi_1857 and Dshi_1858 overlap by 8 nucleotides
Dshi_1854: Dshi_1854 - heme exporter protein CcmB (RefSeq), at 1,934,384 to 1,935,040
_1854
Dshi_1855: Dshi_1855 - heme exporter protein CcmA (RefSeq), at 1,935,037 to 1,935,654
_1855
Dshi_1856: Dshi_1856 - protein of unknown function DUF498 (RefSeq), at 1,935,699 to 1,936,058
_1856
Dshi_1857: Dshi_1857 - protein of unknown function DUF81 (RefSeq), at 1,936,069 to 1,936,821
_1857
Dshi_1858: Dshi_1858 - protein-export membrane protein SecF (RefSeq), at 1,936,814 to 1,937,776
_1858
Position (kb) 1935
1936
1937 Strain fitness (log2 ratio) -1
0
1
2 at 1935.706 kb on + strand at 1935.792 kb on - strand, within Dshi_1856 at 1936.003 kb on + strand, within Dshi_1856 at 1936.004 kb on + strand, within Dshi_1856 at 1936.011 kb on + strand, within Dshi_1856 at 1936.138 kb on - strand at 1936.332 kb on - strand, within Dshi_1857 at 1936.575 kb on - strand, within Dshi_1857
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 1,935,706 + -1.2 1,935,792 - Dshi_1856 0.26 +1.0 1,936,003 + Dshi_1856 0.84 -1.3 1,936,004 + Dshi_1856 0.85 -1.4 1,936,011 + Dshi_1856 0.87 +0.9 1,936,138 - +1.9 1,936,332 - Dshi_1857 0.35 +2.5 1,936,575 - Dshi_1857 0.67 +1.7
Or see this region's nucleotide sequence