Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1854

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1852 and Dshi_1853 are separated by 150 nucleotidesDshi_1853 and Dshi_1854 are separated by 55 nucleotidesDshi_1854 and Dshi_1855 overlap by 4 nucleotidesDshi_1855 and Dshi_1856 are separated by 44 nucleotides Dshi_1852: Dshi_1852 - Redoxin domain protein (RefSeq), at 1,932,907 to 1,933,446 _1852 Dshi_1853: Dshi_1853 - heme exporter protein CcmC (RefSeq), at 1,933,597 to 1,934,328 _1853 Dshi_1854: Dshi_1854 - heme exporter protein CcmB (RefSeq), at 1,934,384 to 1,935,040 _1854 Dshi_1855: Dshi_1855 - heme exporter protein CcmA (RefSeq), at 1,935,037 to 1,935,654 _1855 Dshi_1856: Dshi_1856 - protein of unknown function DUF498 (RefSeq), at 1,935,699 to 1,936,058 _1856 Position (kb) 1934 1935 1936Strain fitness (log2 ratio) -1 0 1at 1935.706 kb on + strandat 1935.792 kb on - strand, within Dshi_1856at 1936.003 kb on + strand, within Dshi_1856at 1936.004 kb on + strand, within Dshi_1856at 1936.011 kb on + strand, within Dshi_1856

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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1,935,706 + -1.2
1,935,792 - Dshi_1856 0.26 +1.0
1,936,003 + Dshi_1856 0.84 -1.3
1,936,004 + Dshi_1856 0.85 -1.4
1,936,011 + Dshi_1856 0.87 +0.9

Or see this region's nucleotide sequence