Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1806

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1805 and Dshi_1806 are separated by 115 nucleotidesDshi_1806 and Dshi_1807 are separated by 270 nucleotidesDshi_1807 and Dshi_1808 are separated by 11 nucleotides Dshi_1805: Dshi_1805 - glutamyl-tRNA synthetase (RefSeq), at 1,878,120 to 1,879,535 _1805 Dshi_1806: Dshi_1806 - citrate synthase I (RefSeq), at 1,879,651 to 1,880,943 _1806 Dshi_1807: Dshi_1807 - UspA domain protein (RefSeq), at 1,881,214 to 1,881,651 _1807 Dshi_1808: Dshi_1808 - amino acid carrier protein (RefSeq), at 1,881,663 to 1,883,201 _1808 Position (kb) 1879 1880 1881Strain fitness (log2 ratio) -1 0 1 2at 1880.929 kb on - strandat 1881.185 kb on - strandat 1881.277 kb on + strand, within Dshi_1807at 1881.728 kb on + strandat 1881.928 kb on - strand, within Dshi_1808

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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1,880,929 - -0.8
1,881,185 - +0.1
1,881,277 + Dshi_1807 0.14 +1.5
1,881,728 + -0.3
1,881,928 - Dshi_1808 0.17 +2.2

Or see this region's nucleotide sequence