Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1800

Experiment: m.b. benzoic 0.32 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1799 and Dshi_1800 overlap by 4 nucleotidesDshi_1800 and Dshi_1801 overlap by 4 nucleotidesDshi_1801 and Dshi_1802 overlap by 4 nucleotides Dshi_1799: Dshi_1799 - anthranilate phosphoribosyltransferase (RefSeq), at 1,871,379 to 1,872,398 _1799 Dshi_1800: Dshi_1800 - Indole-3-glycerol-phosphate synthase (RefSeq), at 1,872,395 to 1,873,210 _1800 Dshi_1801: Dshi_1801 - molybdenum cofactor biosynthesis protein C (RefSeq), at 1,873,207 to 1,873,683 _1801 Dshi_1802: Dshi_1802 - molybdenum cofactor synthesis domain (RefSeq), at 1,873,680 to 1,874,888 _1802 Position (kb) 1872 1873 1874Strain fitness (log2 ratio) -1 0 1 2at 1873.192 kb on + strandat 1873.269 kb on + strand, within Dshi_1801at 1873.335 kb on + strand, within Dshi_1801at 1873.667 kb on - strandat 1873.738 kb on - strandat 1873.821 kb on + strand, within Dshi_1802

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
remove
1,873,192 + +1.8
1,873,269 + Dshi_1801 0.13 -0.8
1,873,335 + Dshi_1801 0.27 -1.2
1,873,667 - +1.8
1,873,738 - -0.0
1,873,821 + Dshi_1802 0.12 -0.2

Or see this region's nucleotide sequence