Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1782 and Dshi_1783 are separated by 252 nucleotides Dshi_1783 and Dshi_1784 are separated by 234 nucleotides Dshi_1784 and Dshi_1785 are separated by 712 nucleotides
Dshi_1782: Dshi_1782 - Rieske (2Fe-2S) domain protein (RefSeq), at 1,851,151 to 1,852,302
_1782
Dshi_1783: Dshi_1783 - hypothetical protein (RefSeq), at 1,852,555 to 1,852,800
_1783
Dshi_1784: Dshi_1784 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 1,853,035 to 1,853,577
_1784
Dshi_1785: Dshi_1785 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (RefSeq), at 1,854,290 to 1,857,964
_1785
Position (kb)
1853
1854 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1852.082 kb on - strand, within Dshi_1782 at 1852.332 kb on + strand at 1852.430 kb on + strand at 1852.504 kb on - strand at 1852.538 kb on + strand at 1852.602 kb on + strand, within Dshi_1783 at 1852.720 kb on - strand, within Dshi_1783 at 1852.778 kb on + strand at 1852.780 kb on + strand at 1852.786 kb on - strand at 1852.788 kb on - strand at 1852.788 kb on - strand at 1852.903 kb on + strand at 1853.163 kb on - strand, within Dshi_1784 at 1853.308 kb on - strand, within Dshi_1784 at 1853.560 kb on + strand at 1853.627 kb on - strand at 1853.753 kb on - strand at 1853.783 kb on + strand at 1853.857 kb on - strand at 1853.857 kb on - strand at 1853.968 kb on + strand at 1853.968 kb on + strand at 1853.969 kb on - strand at 1854.173 kb on - strand at 1854.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 1,852,082 - Dshi_1782 0.81 -0.7 1,852,332 + +1.2 1,852,430 + -2.9 1,852,504 - +0.5 1,852,538 + -1.0 1,852,602 + Dshi_1783 0.19 +0.2 1,852,720 - Dshi_1783 0.67 +2.2 1,852,778 + +0.2 1,852,780 + +0.6 1,852,786 - -1.5 1,852,788 - -0.8 1,852,788 - +0.2 1,852,903 + -2.1 1,853,163 - Dshi_1784 0.24 +0.2 1,853,308 - Dshi_1784 0.50 -1.6 1,853,560 + +1.8 1,853,627 - +0.6 1,853,753 - +1.8 1,853,783 + -0.6 1,853,857 - +1.8 1,853,857 - -1.2 1,853,968 + -1.2 1,853,968 + -1.8 1,853,969 - -1.6 1,854,173 - +0.2 1,854,554 + +2.8
Or see this region's nucleotide sequence