Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1618

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1616 and Dshi_1617 are separated by 3 nucleotidesDshi_1617 and Dshi_1618 are separated by 57 nucleotidesDshi_1618 and Dshi_1619 are separated by 51 nucleotides Dshi_1616: Dshi_1616 - Beta-ketoacyl synthase (RefSeq), at 1,680,682 to 1,681,893 _1616 Dshi_1617: Dshi_1617 - phosphopantetheine-binding (RefSeq), at 1,681,897 to 1,682,166 _1617 Dshi_1618: Dshi_1618 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase (RefSeq), at 1,682,224 to 1,683,315 _1618 Dshi_1619: Dshi_1619 - Peptidoglycan-binding domain 1 protein (RefSeq), at 1,683,367 to 1,684,977 _1619 Position (kb) 1682 1683 1684Strain fitness (log2 ratio) -1 0 1 2 3 4at 1681.227 kb on - strand, within Dshi_1616at 1681.349 kb on - strand, within Dshi_1616at 1681.364 kb on - strand, within Dshi_1616at 1681.364 kb on - strand, within Dshi_1616at 1681.395 kb on + strand, within Dshi_1616at 1681.829 kb on - strandat 1681.829 kb on - strandat 1681.917 kb on + strandat 1682.049 kb on + strand, within Dshi_1617at 1682.049 kb on + strand, within Dshi_1617at 1682.107 kb on + strand, within Dshi_1617at 1682.209 kb on - strandat 1683.392 kb on + strandat 1683.410 kb on - strandat 1683.433 kb on + strandat 1683.667 kb on + strand, within Dshi_1619at 1683.707 kb on - strand, within Dshi_1619at 1683.768 kb on + strand, within Dshi_1619at 1683.794 kb on + strand, within Dshi_1619at 1683.836 kb on - strand, within Dshi_1619at 1683.865 kb on + strand, within Dshi_1619at 1683.883 kb on + strand, within Dshi_1619at 1684.025 kb on + strand, within Dshi_1619at 1684.098 kb on - strand, within Dshi_1619at 1684.172 kb on - strand, within Dshi_1619at 1684.237 kb on + strand, within Dshi_1619at 1684.245 kb on - strand, within Dshi_1619

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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1,681,227 - Dshi_1616 0.45 +1.3
1,681,349 - Dshi_1616 0.55 +3.6
1,681,364 - Dshi_1616 0.56 +2.0
1,681,364 - Dshi_1616 0.56 +2.8
1,681,395 + Dshi_1616 0.59 +1.6
1,681,829 - +1.3
1,681,829 - +0.7
1,681,917 + +4.3
1,682,049 + Dshi_1617 0.56 +1.5
1,682,049 + Dshi_1617 0.56 +2.1
1,682,107 + Dshi_1617 0.78 +2.2
1,682,209 - +1.1
1,683,392 + +0.6
1,683,410 - +0.2
1,683,433 + +0.6
1,683,667 + Dshi_1619 0.19 -0.7
1,683,707 - Dshi_1619 0.21 -0.4
1,683,768 + Dshi_1619 0.25 -0.1
1,683,794 + Dshi_1619 0.27 -0.8
1,683,836 - Dshi_1619 0.29 -0.4
1,683,865 + Dshi_1619 0.31 -0.2
1,683,883 + Dshi_1619 0.32 -0.0
1,684,025 + Dshi_1619 0.41 +0.4
1,684,098 - Dshi_1619 0.45 -0.3
1,684,172 - Dshi_1619 0.50 -0.1
1,684,237 + Dshi_1619 0.54 +0.4
1,684,245 - Dshi_1619 0.55 +1.1

Or see this region's nucleotide sequence