Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1539

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1537 and Dshi_1538 are separated by 4 nucleotidesDshi_1538 and Dshi_1539 are separated by 157 nucleotidesDshi_1539 and Dshi_1540 are separated by 72 nucleotides Dshi_1537: Dshi_1537 - phosphate uptake regulator, PhoU (RefSeq), at 1,598,428 to 1,599,141 _1537 Dshi_1538: Dshi_1538 - two component transcriptional regulator, winged helix family (RefSeq), at 1,599,146 to 1,599,832 _1538 Dshi_1539: Dshi_1539 - Na+/Ca+ antiporter, CaCA family (RefSeq), at 1,599,990 to 1,600,946 _1539 Dshi_1540: Dshi_1540 - 2-alkenal reductase (RefSeq), at 1,601,019 to 1,602,053 _1540 Position (kb) 1599 1600 1601Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1599.136 kb on + strandat 1599.887 kb on + strandat 1599.965 kb on - strandat 1600.180 kb on + strand, within Dshi_1539at 1600.343 kb on + strand, within Dshi_1539at 1600.405 kb on - strand, within Dshi_1539at 1600.649 kb on + strand, within Dshi_1539at 1600.692 kb on + strand, within Dshi_1539at 1600.700 kb on - strand, within Dshi_1539at 1600.878 kb on - strandat 1600.998 kb on - strandat 1601.092 kb on + strandat 1601.242 kb on + strand, within Dshi_1540at 1601.250 kb on - strand, within Dshi_1540at 1601.302 kb on - strand, within Dshi_1540at 1601.389 kb on + strand, within Dshi_1540at 1601.397 kb on - strand, within Dshi_1540at 1601.436 kb on - strand, within Dshi_1540at 1601.545 kb on + strand, within Dshi_1540at 1601.550 kb on + strand, within Dshi_1540at 1601.557 kb on - strand, within Dshi_1540at 1601.595 kb on + strand, within Dshi_1540at 1601.595 kb on + strand, within Dshi_1540at 1601.639 kb on + strand, within Dshi_1540at 1601.686 kb on + strand, within Dshi_1540at 1601.853 kb on + strand, within Dshi_1540

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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1,599,136 + +1.8
1,599,887 + +1.2
1,599,965 - +1.2
1,600,180 + Dshi_1539 0.20 -0.3
1,600,343 + Dshi_1539 0.37 -0.8
1,600,405 - Dshi_1539 0.43 -0.6
1,600,649 + Dshi_1539 0.69 -1.4
1,600,692 + Dshi_1539 0.73 +0.6
1,600,700 - Dshi_1539 0.74 +0.2
1,600,878 - -1.9
1,600,998 - -0.4
1,601,092 + +1.5
1,601,242 + Dshi_1540 0.22 -1.6
1,601,250 - Dshi_1540 0.22 -1.6
1,601,302 - Dshi_1540 0.27 +1.2
1,601,389 + Dshi_1540 0.36 -2.1
1,601,397 - Dshi_1540 0.37 -1.8
1,601,436 - Dshi_1540 0.40 -0.2
1,601,545 + Dshi_1540 0.51 +1.8
1,601,550 + Dshi_1540 0.51 -1.6
1,601,557 - Dshi_1540 0.52 -1.5
1,601,595 + Dshi_1540 0.56 +0.2
1,601,595 + Dshi_1540 0.56 +0.2
1,601,639 + Dshi_1540 0.60 +0.2
1,601,686 + Dshi_1540 0.64 -2.8
1,601,853 + Dshi_1540 0.81 -2.2

Or see this region's nucleotide sequence