Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1535 and Dshi_1536 are separated by 16 nucleotides Dshi_1536 and Dshi_1537 overlap by 1 nucleotides Dshi_1537 and Dshi_1538 are separated by 4 nucleotides Dshi_1538 and Dshi_1539 are separated by 157 nucleotides
Dshi_1535: Dshi_1535 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 1,596,265 to 1,597,617
_1535
Dshi_1536: Dshi_1536 - phosphate ABC transporter, ATPase subunit (RefSeq), at 1,597,634 to 1,598,428
_1536
Dshi_1537: Dshi_1537 - phosphate uptake regulator, PhoU (RefSeq), at 1,598,428 to 1,599,141
_1537
Dshi_1538: Dshi_1538 - two component transcriptional regulator, winged helix family (RefSeq), at 1,599,146 to 1,599,832
_1538
Dshi_1539: Dshi_1539 - Na+/Ca+ antiporter, CaCA family (RefSeq), at 1,599,990 to 1,600,946
_1539
Position (kb) 1598
1599
1600 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1598.883 kb on + strand, within Dshi_1537 at 1598.922 kb on + strand, within Dshi_1537 at 1598.947 kb on + strand, within Dshi_1537 at 1599.136 kb on + strand at 1599.887 kb on + strand at 1599.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 1,598,883 + Dshi_1537 0.64 -4.0 1,598,922 + Dshi_1537 0.69 -2.6 1,598,947 + Dshi_1537 0.73 -0.1 1,599,136 + +1.8 1,599,887 + +1.2 1,599,965 - +1.2
Or see this region's nucleotide sequence