Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_R0028

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1482 and Dshi_R0028 are separated by 51 nucleotidesDshi_R0028 and Dshi_1483 are separated by 43 nucleotidesDshi_1483 and Dshi_1484 are separated by 163 nucleotides Dshi_1482: Dshi_1482 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,536,841 to 1,538,193 _1482 Dshi_R0028: Dshi_R0028 - tRNA-Leu (RefSeq), at 1,538,245 to 1,538,331 _R0028 Dshi_1483: Dshi_1483 - hypothetical protein (RefSeq), at 1,538,375 to 1,538,743 _1483 Dshi_1484: Dshi_1484 - hypothetical protein (RefSeq), at 1,538,907 to 1,539,512 _1484 Position (kb) 1538 1539Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1537.542 kb on + strand, within Dshi_1482at 1537.553 kb on + strand, within Dshi_1482at 1537.840 kb on - strand, within Dshi_1482at 1537.966 kb on - strand, within Dshi_1482at 1538.091 kb on - strandat 1538.384 kb on + strandat 1538.669 kb on - strand, within Dshi_1483at 1539.008 kb on - strand, within Dshi_1484at 1539.146 kb on + strand, within Dshi_1484at 1539.254 kb on + strand, within Dshi_1484

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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1,537,542 + Dshi_1482 0.52 -4.0
1,537,553 + Dshi_1482 0.53 -0.4
1,537,840 - Dshi_1482 0.74 +0.2
1,537,966 - Dshi_1482 0.83 +1.2
1,538,091 - -1.6
1,538,384 + -0.6
1,538,669 - Dshi_1483 0.80 -1.9
1,539,008 - Dshi_1484 0.17 -1.4
1,539,146 + Dshi_1484 0.39 -1.8
1,539,254 + Dshi_1484 0.57 +0.2

Or see this region's nucleotide sequence