Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1389

Experiment: m.b. benzoic 0.32 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1388 and Dshi_1389 are separated by 236 nucleotidesDshi_1389 and Dshi_1390 are separated by 30 nucleotidesDshi_1390 and Dshi_1391 are separated by 47 nucleotidesDshi_1391 and Dshi_1392 overlap by 4 nucleotides Dshi_1388: Dshi_1388 - Endopeptidase Clp (RefSeq), at 1,442,020 to 1,442,646 _1388 Dshi_1389: Dshi_1389 - deoxyribodipyrimidine photo-lyase, putative (RefSeq), at 1,442,883 to 1,444,100 _1389 Dshi_1390: Dshi_1390 - NADH:ubiquinone oxidoreductase 17.2 kD subunit (RefSeq), at 1,444,131 to 1,444,565 _1390 Dshi_1391: Dshi_1391 - Mammalian cell entry related domain protein (RefSeq), at 1,444,613 to 1,445,059 _1391 Dshi_1392: Dshi_1392 - hypothetical protein (RefSeq), at 1,445,056 to 1,445,598 _1392 Position (kb) 1442 1443 1444 1445Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1441.981 kb on + strandat 1441.989 kb on - strandat 1441.991 kb on + strandat 1442.080 kb on - strandat 1442.697 kb on + strandat 1442.721 kb on + strandat 1442.729 kb on - strandat 1442.785 kb on - strandat 1442.854 kb on - strandat 1442.872 kb on + strandat 1442.873 kb on + strandat 1442.922 kb on + strandat 1443.081 kb on - strand, within Dshi_1389at 1443.162 kb on - strand, within Dshi_1389at 1443.191 kb on - strand, within Dshi_1389at 1443.200 kb on + strand, within Dshi_1389at 1443.286 kb on + strand, within Dshi_1389at 1443.311 kb on + strand, within Dshi_1389at 1443.422 kb on + strand, within Dshi_1389at 1443.474 kb on + strand, within Dshi_1389at 1443.483 kb on - strand, within Dshi_1389at 1443.491 kb on + strand, within Dshi_1389at 1443.491 kb on + strand, within Dshi_1389at 1443.547 kb on - strand, within Dshi_1389at 1443.586 kb on - strand, within Dshi_1389at 1443.722 kb on - strand, within Dshi_1389at 1443.722 kb on - strand, within Dshi_1389at 1443.841 kb on - strand, within Dshi_1389at 1443.883 kb on + strand, within Dshi_1389at 1443.883 kb on + strand, within Dshi_1389at 1443.908 kb on + strand, within Dshi_1389at 1444.739 kb on + strand, within Dshi_1391at 1444.759 kb on - strand, within Dshi_1391at 1444.997 kb on + strand, within Dshi_1391at 1445.002 kb on + strand, within Dshi_1391at 1445.013 kb on + strand, within Dshi_1391at 1445.080 kb on + strandat 1445.088 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml
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1,441,981 + -0.4
1,441,989 - -0.3
1,441,991 + +1.6
1,442,080 - +0.5
1,442,697 + +2.3
1,442,721 + +0.0
1,442,729 - +0.6
1,442,785 - -0.7
1,442,854 - +1.1
1,442,872 + +0.7
1,442,873 + -0.1
1,442,922 + -1.2
1,443,081 - Dshi_1389 0.16 -3.2
1,443,162 - Dshi_1389 0.23 +2.8
1,443,191 - Dshi_1389 0.25 -2.3
1,443,200 + Dshi_1389 0.26 +0.2
1,443,286 + Dshi_1389 0.33 -1.7
1,443,311 + Dshi_1389 0.35 +3.6
1,443,422 + Dshi_1389 0.44 +1.3
1,443,474 + Dshi_1389 0.49 -1.3
1,443,483 - Dshi_1389 0.49 -1.2
1,443,491 + Dshi_1389 0.50 -0.9
1,443,491 + Dshi_1389 0.50 +0.3
1,443,547 - Dshi_1389 0.55 -0.4
1,443,586 - Dshi_1389 0.58 +2.3
1,443,722 - Dshi_1389 0.69 -0.3
1,443,722 - Dshi_1389 0.69 -1.1
1,443,841 - Dshi_1389 0.79 -2.7
1,443,883 + Dshi_1389 0.82 -0.6
1,443,883 + Dshi_1389 0.82 -0.2
1,443,908 + Dshi_1389 0.84 -0.6
1,444,739 + Dshi_1391 0.28 -1.5
1,444,759 - Dshi_1391 0.33 -1.9
1,444,997 + Dshi_1391 0.86 +0.3
1,445,002 + Dshi_1391 0.87 +0.7
1,445,013 + Dshi_1391 0.89 -0.3
1,445,080 + +0.3
1,445,088 - -0.3

Or see this region's nucleotide sequence