Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1388 and Dshi_1389 are separated by 236 nucleotides Dshi_1389 and Dshi_1390 are separated by 30 nucleotides Dshi_1390 and Dshi_1391 are separated by 47 nucleotides Dshi_1391 and Dshi_1392 overlap by 4 nucleotides
Dshi_1388: Dshi_1388 - Endopeptidase Clp (RefSeq), at 1,442,020 to 1,442,646
_1388
Dshi_1389: Dshi_1389 - deoxyribodipyrimidine photo-lyase, putative (RefSeq), at 1,442,883 to 1,444,100
_1389
Dshi_1390: Dshi_1390 - NADH:ubiquinone oxidoreductase 17.2 kD subunit (RefSeq), at 1,444,131 to 1,444,565
_1390
Dshi_1391: Dshi_1391 - Mammalian cell entry related domain protein (RefSeq), at 1,444,613 to 1,445,059
_1391
Dshi_1392: Dshi_1392 - hypothetical protein (RefSeq), at 1,445,056 to 1,445,598
_1392
Position (kb)
1442
1443
1444
1445 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1441.981 kb on + strand at 1441.989 kb on - strand at 1441.991 kb on + strand at 1442.080 kb on - strand at 1442.697 kb on + strand at 1442.721 kb on + strand at 1442.729 kb on - strand at 1442.785 kb on - strand at 1442.854 kb on - strand at 1442.872 kb on + strand at 1442.873 kb on + strand at 1442.922 kb on + strand at 1443.081 kb on - strand, within Dshi_1389 at 1443.162 kb on - strand, within Dshi_1389 at 1443.191 kb on - strand, within Dshi_1389 at 1443.200 kb on + strand, within Dshi_1389 at 1443.286 kb on + strand, within Dshi_1389 at 1443.311 kb on + strand, within Dshi_1389 at 1443.422 kb on + strand, within Dshi_1389 at 1443.474 kb on + strand, within Dshi_1389 at 1443.483 kb on - strand, within Dshi_1389 at 1443.491 kb on + strand, within Dshi_1389 at 1443.491 kb on + strand, within Dshi_1389 at 1443.547 kb on - strand, within Dshi_1389 at 1443.586 kb on - strand, within Dshi_1389 at 1443.722 kb on - strand, within Dshi_1389 at 1443.722 kb on - strand, within Dshi_1389 at 1443.841 kb on - strand, within Dshi_1389 at 1443.883 kb on + strand, within Dshi_1389 at 1443.883 kb on + strand, within Dshi_1389 at 1443.908 kb on + strand, within Dshi_1389 at 1444.739 kb on + strand, within Dshi_1391 at 1444.759 kb on - strand, within Dshi_1391 at 1444.997 kb on + strand, within Dshi_1391 at 1445.002 kb on + strand, within Dshi_1391 at 1445.013 kb on + strand, within Dshi_1391 at 1445.080 kb on + strand at 1445.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.32 mg/ml remove 1,441,981 + -0.4 1,441,989 - -0.3 1,441,991 + +1.6 1,442,080 - +0.5 1,442,697 + +2.3 1,442,721 + +0.0 1,442,729 - +0.6 1,442,785 - -0.7 1,442,854 - +1.1 1,442,872 + +0.7 1,442,873 + -0.1 1,442,922 + -1.2 1,443,081 - Dshi_1389 0.16 -3.2 1,443,162 - Dshi_1389 0.23 +2.8 1,443,191 - Dshi_1389 0.25 -2.3 1,443,200 + Dshi_1389 0.26 +0.2 1,443,286 + Dshi_1389 0.33 -1.7 1,443,311 + Dshi_1389 0.35 +3.6 1,443,422 + Dshi_1389 0.44 +1.3 1,443,474 + Dshi_1389 0.49 -1.3 1,443,483 - Dshi_1389 0.49 -1.2 1,443,491 + Dshi_1389 0.50 -0.9 1,443,491 + Dshi_1389 0.50 +0.3 1,443,547 - Dshi_1389 0.55 -0.4 1,443,586 - Dshi_1389 0.58 +2.3 1,443,722 - Dshi_1389 0.69 -0.3 1,443,722 - Dshi_1389 0.69 -1.1 1,443,841 - Dshi_1389 0.79 -2.7 1,443,883 + Dshi_1389 0.82 -0.6 1,443,883 + Dshi_1389 0.82 -0.2 1,443,908 + Dshi_1389 0.84 -0.6 1,444,739 + Dshi_1391 0.28 -1.5 1,444,759 - Dshi_1391 0.33 -1.9 1,444,997 + Dshi_1391 0.86 +0.3 1,445,002 + Dshi_1391 0.87 +0.7 1,445,013 + Dshi_1391 0.89 -0.3 1,445,080 + +0.3 1,445,088 - -0.3
Or see this region's nucleotide sequence