Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1385
Experiment: m.b. benzoic 0.32 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. benzoic 0.32 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,437,654 | + | Dshi_1384 | 0.30 | +3.6 | |
1,437,679 | + | Dshi_1384 | 0.32 | +0.3 | |
1,437,686 | - | Dshi_1384 | 0.33 | +0.3 | |
1,437,729 | - | Dshi_1384 | 0.37 | +1.3 | |
1,437,778 | + | Dshi_1384 | 0.42 | +1.0 | |
1,437,786 | - | Dshi_1384 | 0.43 | -0.7 | |
1,437,812 | + | Dshi_1384 | 0.46 | +0.1 | |
1,437,812 | + | Dshi_1384 | 0.46 | +0.3 | |
1,437,973 | + | Dshi_1384 | 0.62 | +2.6 | |
1,438,234 | - | Dshi_1384 | 0.88 | -0.9 | |
1,438,258 | - | +3.3 | |||
1,438,298 | + | -0.0 | |||
1,438,488 | + | +0.3 | |||
1,438,511 | - | +0.5 | |||
1,438,532 | - | +0.1 | |||
1,438,537 | - | -3.5 | |||
1,438,605 | + | +1.3 | |||
1,438,645 | + | Dshi_1385 | 0.13 | +1.3 | |
1,438,696 | - | Dshi_1385 | 0.26 | -0.0 | |
1,438,723 | + | Dshi_1385 | 0.32 | +2.3 | |
1,438,941 | - | Dshi_1385 | 0.87 | +2.0 | |
1,438,999 | + | -0.9 | |||
1,439,338 | - | Dshi_1386 | 0.24 | -0.4 | |
1,439,461 | - | Dshi_1386 | 0.33 | +0.4 | |
1,439,539 | - | Dshi_1386 | 0.38 | +0.6 | |
1,439,615 | - | Dshi_1386 | 0.44 | +3.1 | |
1,439,626 | - | Dshi_1386 | 0.45 | -0.8 | |
1,439,801 | - | Dshi_1386 | 0.57 | +1.9 | |
1,439,895 | + | Dshi_1386 | 0.64 | -0.2 | |
1,439,902 | + | Dshi_1386 | 0.64 | +1.9 | |
1,439,918 | + | Dshi_1386 | 0.65 | +1.0 | |
1,439,951 | + | Dshi_1386 | 0.68 | -2.0 |
Or see this region's nucleotide sequence